C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil domain containing 53
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020056 Ccdc53 10090 + 10:88201093-88246158 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020248 Ccdc53-001 88201093-88246158 protein_coding
  ENSMUST00000171151 Ccdc53-002 88201171-88225362 protein_coding
  ENSMUST00000182183 Ccdc53-007 88201152-88246006 protein_coding
  ENSMUST00000182211 Ccdc53-006 88235429-88246007 processed_transcript
  ENSMUST00000182299 Ccdc53-004 88201146-88216065 nonsense_mediated_decay
  ENSMUST00000182351 Ccdc53-003 88201184-88215767 retained_intron
  ENSMUST00000182359 Ccdc53-005 88204546-88234660 processed_transcript
  ENSMUST00000182619 Ccdc53-008 88201263-88225141 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020248ENSMUST00000171151ENSMUST00000182183ENSMUST00000182299ENSMUST00000182351
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020248 3.956±0.85 1.382±0.30 10.096±0.51 4.237±0.72 2.912±1.05 3.272±1.07 2.373±0.95 3.245±0.72 4.090±1.99 2.140±0.85 5.376±1.74 5.684±4.05 12.581±2.59 4.818±1.41
ENSMUST00000171151 N/A 1.571±0.30 N/A N/A 1.105±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 2.511±0.04
ENSMUST00000182183 7.481±1.06 2.478±1.28 10.273±0.35 4.234±1.72 5.427±1.29 4.414±1.15 3.808±0.94 6.759±1.28 5.216±1.64 5.511±0.43 7.738±1.68 7.285±5.23 15.959±6.57 9.075±1.89
ENSMUST00000182299 N/A 2.251±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182351 N/A 0.284±0.06 N/A 0.354±0.00 N/A N/A N/A N/A N/A N/A N/A 0.695±0.12 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00079C CIL_00079C_0002 CGP 10:88201093-88379080

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0008150 ND biological_process
GO:0015629 IEA actin cytoskeleton
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0071203 IEA:ISS WASH complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045563 ccdc53 coiled-coil domain containing 53 protein_coding Danio_rerio
ENSG00000120860 CCDC53 coiled-coil domain containing 53 protein_coding Homo_sapiens

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