C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 53
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020248 Ccdc53-001 ENSMUSG00000020056 10090 + 10:88201093-88246158 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020248
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020248 3.956±0.85 1.382±0.30 10.096±0.51 4.237±0.72 2.912±1.05 3.272±1.07 2.373±0.95 3.245±0.72 4.090±1.99 2.140±0.85 5.376±1.74 5.684±4.05 12.581±2.59 4.818±1.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00079C CIL_00079C_0002 CGP 10:88201093-88379080

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0008150 ND biological_process
GO:0015629 IEA actin cytoskeleton
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0071203 IEA:ISS WASH complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000240079 CCDC53-001 protein_coding Homo_sapiens 0 723
ENST00000326351 CCDC53-008 retained_intron Homo_sapiens 0 470
ENST00000500685 CCDC53-006 nonsense_mediated_decay Homo_sapiens 0 292
ENST00000518956 KB-1517D11.2-001 processed_pseudogene Homo_sapiens 0 473
ENST00000535501 CCDC53-004 nonsense_mediated_decay Homo_sapiens 0 457
ENST00000536930 CCDC53-011 processed_transcript Homo_sapiens 0 248
ENST00000538761 CCDC53-010 nonsense_mediated_decay Homo_sapiens 0 464
ENST00000539515 CCDC53-005 processed_transcript Homo_sapiens 0 383
ENST00000540536 CCDC53-007 nonsense_mediated_decay Homo_sapiens 0 641
ENST00000541569 CCDC53-009 retained_intron Homo_sapiens 0 636
ENST00000542923 CCDC53-012 protein_coding Homo_sapiens 0 217
ENST00000544341 CCDC53-003 nonsense_mediated_decay Homo_sapiens 0 638
ENST00000545679 CCDC53-002 protein_coding Homo_sapiens 0 713

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