C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 53
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182183 Ccdc53-007 ENSMUSG00000020056 10090 + 10:88201152-88246006 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000182183
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000182183 7.481±1.06 2.478±1.28 10.273±0.35 4.234±1.72 5.427±1.29 4.414±1.15 3.808±0.94 6.759±1.28 5.216±1.64 5.511±0.43 7.738±1.68 7.285±5.23 15.959±6.57 9.075±1.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00079C CIL_00079C_0002 CGP 10:88201093-88379080

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0071203 IEA WASH complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000240079 CCDC53-001 protein_coding Homo_sapiens 0 713
ENST00000326351 CCDC53-008 retained_intron Homo_sapiens 0 470
ENST00000500685 CCDC53-006 nonsense_mediated_decay Homo_sapiens 0 296
ENST00000518956 KB-1517D11.2-001 processed_pseudogene Homo_sapiens 0 481
ENST00000535501 CCDC53-004 nonsense_mediated_decay Homo_sapiens 0 460
ENST00000536930 CCDC53-011 processed_transcript Homo_sapiens 0 248
ENST00000538761 CCDC53-010 nonsense_mediated_decay Homo_sapiens 0 455
ENST00000539515 CCDC53-005 processed_transcript Homo_sapiens 0 387
ENST00000540536 CCDC53-007 nonsense_mediated_decay Homo_sapiens 0 634
ENST00000541569 CCDC53-009 retained_intron Homo_sapiens 0 628
ENST00000542923 CCDC53-012 protein_coding Homo_sapiens 0 217
ENST00000544341 CCDC53-003 nonsense_mediated_decay Homo_sapiens 0 641
ENST00000545679 CCDC53-002 protein_coding Homo_sapiens 0 717

Loading