C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 53
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171151 Ccdc53-002 ENSMUSG00000020056 10090 + 10:88201171-88225362 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastTestisENSMUST00000171151
Transcript ID Adrenal Breast Testis
ENSMUST00000171151 1.571±0.30 1.105±0.00 2.511±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00079C CIL_00079C_0002 CGP 10:88201093-88379080

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0071203 IEA WASH complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000240079 CCDC53-001 protein_coding Homo_sapiens 0 582
ENST00000326351 CCDC53-008 retained_intron Homo_sapiens 0 470
ENST00000500685 CCDC53-006 nonsense_mediated_decay Homo_sapiens 0 292
ENST00000518956 KB-1517D11.2-001 processed_pseudogene Homo_sapiens 0 398
ENST00000535501 CCDC53-004 nonsense_mediated_decay Homo_sapiens 0 316
ENST00000536930 CCDC53-011 processed_transcript Homo_sapiens 0 248
ENST00000538761 CCDC53-010 nonsense_mediated_decay Homo_sapiens 0 324
ENST00000539515 CCDC53-005 processed_transcript Homo_sapiens 0 316
ENST00000540536 CCDC53-007 nonsense_mediated_decay Homo_sapiens 0 575
ENST00000541569 CCDC53-009 retained_intron Homo_sapiens 0 569
ENST00000542923 CCDC53-012 protein_coding Homo_sapiens 0 217
ENST00000544341 CCDC53-003 nonsense_mediated_decay Homo_sapiens 0 573
ENST00000545679 CCDC53-002 protein_coding Homo_sapiens 0 573

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