C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil domain containing 53
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000120860 CCDC53 9606 - 12:102012927-102062149 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000240079 CCDC53-001 102012939-102062124 protein_coding
  ENST00000326351 CCDC53-008 102043615-102061991 retained_intron
  ENST00000500685 CCDC53-006 102039884-102062012 nonsense_mediated_decay
  ENST00000535501 CCDC53-004 102012944-102062034 nonsense_mediated_decay
  ENST00000536197 CCDC53-013 102012946-102040434 retained_intron
  ENST00000536930 CCDC53-011 102059664-102061974 processed_transcript
  ENST00000538761 CCDC53-010 102012927-102061974 nonsense_mediated_decay
  ENST00000539515 CCDC53-005 102019277-102062149 processed_transcript
  ENST00000540536 CCDC53-007 102012943-102062000 nonsense_mediated_decay
  ENST00000541569 CCDC53-009 102025921-102061978 retained_intron
  ENST00000542923 CCDC53-012 102012955-102046119 protein_coding
  ENST00000544341 CCDC53-003 102012942-102062073 nonsense_mediated_decay
  ENST00000545679 CCDC53-002 102012942-102062079 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000240079ENST00000535501ENST00000538761ENST00000540536ENST00000541569ENST00000542923ENST00000544341ENST00000545679
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000240079 5.019±0.00 3.659±0.00 3.971±0.00 11.622±0.36 6.905±1.74 8.275±4.60 4.969±1.12 9.165±6.28 5.766±0.77 5.640±1.16 5.857±2.13 9.848±5.46 9.372±2.70 43.697±24.34
ENST00000535501 2.440±0.00 N/A N/A 4.553±0.00 2.442±0.00 3.456±0.00 N/A 4.637±0.00 1.791±0.00 2.689±0.85 0.870±0.00 N/A 2.774±0.00 N/A
ENST00000538761 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.223±0.00 N/A N/A
ENST00000540536 N/A 2.532±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541569 N/A N/A N/A N/A N/A N/A N/A 3.603±0.00 N/A N/A 5.136±0.00 N/A 6.421±0.00 N/A
ENST00000542923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.029±0.00 N/A N/A N/A
ENST00000544341 N/A N/A N/A N/A N/A N/A N/A N/A 1.647±0.00 N/A N/A N/A N/A N/A
ENST00000545679 N/A N/A 1.577±0.00 4.344±0.00 2.759±0.00 2.779±0.00 2.128±0.42 2.141±0.00 N/A N/A N/A 3.501±1.47 2.970±0.00 11.219±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0008150 ND biological_process
GO:0015629 IDA actin cytoskeleton
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0071203 IEA:IDA WASH complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045563 ccdc53 coiled-coil domain containing 53 protein_coding Danio_rerio
ENSMUSG00000020056 Ccdc53 coiled-coil domain containing 53 protein_coding Mus_musculus

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