C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: host cell factor C2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020478 Hcfc2-001 ENSMUSG00000020246 10090 + 10:82699007-82742428 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020478
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020478 2.526±0.14 2.313±1.14 4.083±1.06 7.768±0.50 4.011±0.70 1.231±0.15 2.570±0.94 1.778±0.60 1.846±1.00 1.640±0.63 2.206±0.64 2.741±1.22 5.255±0.62 11.151±4.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002S8 CIL_0002S8_0002 CGP 10:82650433-82742428
CIL_0002SA CIL_0002SA_0002 CGP 10:82696160-82764144

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229330 HCFC2-001 protein_coding Homo_sapiens 0 1823
ENST00000544223 HCFC2-002 nonsense_mediated_decay Homo_sapiens 0 1694
ENST00000547194 HCFC2-003 retained_intron Homo_sapiens 0 351
ENST00000550335 HCFC2-005 processed_transcript Homo_sapiens 0 756
ENST00000550444 HCFC2-004 protein_coding Homo_sapiens 0 503
ENST00000552343 HCFC2-006 retained_intron Homo_sapiens 0 756

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