C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear transcription factor-Y beta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020248 Nfyb 10090 - 10:82748701-82764144 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000127832 Nfyb-003 82752416-82763663 processed_transcript
  ENSMUST00000128397 Nfyb-006 82755068-82757307 retained_intron
  ENSMUST00000129640 Nfyb-005 82751166-82752550 retained_intron
  ENSMUST00000130911 Nfyb-001 82748701-82764144 protein_coding
  ENSMUST00000142523 Nfyb-002 82752518-82763646 protein_coding
  ENSMUST00000143749 Nfyb-007 82749287-82764101 retained_intron
  ENSMUST00000145561 Nfyb-004 82750474-82751659 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000127832ENSMUST00000129640ENSMUST00000130911ENSMUST00000142523ENSMUST00000143749ENSMUST00000145561
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000127832 2.593±0.00 3.358±2.38 N/A N/A 1.328±0.00 2.573±0.00 N/A 2.981±0.27 3.245±0.00 1.267±0.00 N/A 2.395±1.11 N/A N/A
ENSMUST00000129640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.213±0.00
ENSMUST00000130911 3.936±0.58 2.140±0.35 8.633±0.54 18.496±1.57 2.721±1.22 2.352±0.64 2.607±0.49 3.799±0.95 11.794±7.69 4.335±0.46 6.226±1.89 3.478±2.41 7.092±2.52 2.152±0.11
ENSMUST00000142523 N/A N/A N/A N/A N/A N/A N/A N/A 5.911±0.76 N/A N/A N/A N/A N/A
ENSMUST00000143749 0.632±0.28 N/A N/A N/A 0.660±0.26 0.712±0.14 N/A N/A 0.868±0.00 0.580±0.11 N/A 0.710±0.28 N/A 0.398±0.07
ENSMUST00000145561 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 27.306±0.00 25.417±0.00 4.328±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002SA CIL_0002SA_0002 CGP 10:82696160-82764144
CIL_0004AC CIL_0004AC_0002 CGP 10:82748701-82897724

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 ISO nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 IC transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016602 IEA CCAAT-binding factor complex
GO:0032403 IEA protein complex binding
GO:0043565 IEA sequence-specific DNA binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046982 IEA protein heterodimerization activity
GO:0070491 IEA repressing transcription factor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039185 nfyba nuclear transcription factor Y, beta a protein_coding Danio_rerio
ENSDARG00000045611 nfybb nuclear transcription factor Y, beta b protein_coding Danio_rerio
ENSG00000120837 NFYB nuclear transcription factor Y, beta protein_coding Homo_sapiens

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