C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear transcription factor-Y beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130911 Nfyb-001 ENSMUSG00000020248 10090 - 10:82748701-82764144 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000130911
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000130911 3.936±0.58 2.140±0.35 8.633±0.54 18.496±1.57 2.721±1.22 2.352±0.64 2.607±0.49 3.799±0.95 11.794±7.69 4.335±0.46 6.226±1.89 3.478±2.41 7.092±2.52 2.152±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002SA CIL_0002SA_0002 CGP 10:82696160-82764144
CIL_0004AC CIL_0004AC_0002 CGP 10:82748701-82897724

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 ISO nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 IC transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016602 IEA CCAAT-binding factor complex
GO:0032403 IEA protein complex binding
GO:0043565 IEA sequence-specific DNA binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046982 IEA protein heterodimerization activity
GO:0070491 IEA repressing transcription factor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000240055 NFYB-001 protein_coding Homo_sapiens 0 1687
ENST00000488231 RP11-457K10.2-001 processed_pseudogene Homo_sapiens 0 636
ENST00000550189 NFYB-005 retained_intron Homo_sapiens 0 586
ENST00000550881 NFYB-002 retained_intron Homo_sapiens 0 191
ENST00000551446 NFYB-004 protein_coding Homo_sapiens 0 470
ENST00000551727 NFYB-003 protein_coding Homo_sapiens 0 1227

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