C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004AC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000120837-ENSG00000198431 CGP 9606 12:104117077-104350305
GeneTranscriptPositionBiotype
ENSG00000120837 (NFYB)
nuclear transcription factor Y, beta 		ENST00000240055 (NFYB-001) 104117077-104138289 protein_coding
ENST00000550189 (NFYB-005) 104121254-104128612 retained_intron
ENST00000550881 (NFYB-002) 104131132-104138241 retained_intron
ENST00000551446 (NFYB-004) 104123264-104138203 protein_coding
ENST00000551727 (NFYB-003) 104119355-104138017 protein_coding
ENSG00000198431 (TXNRD1)
thioredoxin reductase 1 		ENST00000354940 (TXNRD1-201) 104286682-104350305 protein_coding
ENST00000388854 (TXNRD1-202) 104286682-104350305 protein_coding
ENST00000397736 (TXNRD1-203) 104286682-104350305 protein_coding
ENST00000429002 (TXNRD1-204) 104215779-104350305 protein_coding
ENST00000503506 (TXNRD1-003) 104286682-104350277 protein_coding
ENST00000524698 (TXNRD1-006) 104287368-104348644 protein_coding
ENST00000525265 (TXNRD1-019) 104334127-104348583 retained_intron
ENST00000525566 (TXNRD1-001) 104215779-104350283 protein_coding
ENST00000526006 (TXNRD1-010) 104251546-104284406 processed_transcript
ENST00000526207 (TXNRD1-018) 104287032-104289403 retained_intron
ENST00000526266 (TXNRD1-012) 104286002-104315826 protein_coding
ENST00000526390 (TXNRD1-017) 104286990-104350274 protein_coding
ENST00000526580 (TXNRD1-005) 104287057-104318943 protein_coding
ENST00000526691 (TXNRD1-002) 104286881-104350283 protein_coding
ENST00000526950 (TXNRD1-009) 104309851-104348483 protein_coding
ENST00000527335 (TXNRD1-014) 104288895-104319573 protein_coding
ENST00000527688 (TXNRD1-007) 104288718-104350283 nonsense_mediated_decay
ENST00000528079 (TXNRD1-020) 104287049-104311406 protein_coding
ENST00000529546 (TXNRD1-004) 104287022-104348828 protein_coding
ENST00000529751 (TXNRD1-021) 104287024-104327574 protein_coding
ENST00000529784 (TXNRD1-015) 104287322-104313316 protein_coding
ENST00000531689 (TXNRD1-013) 104286995-104315832 protein_coding
ENST00000531691 (TXNRD1-016) 104286925-104315901 protein_coding
ENST00000534282 (TXNRD1-011) 104224816-104258268 retained_intron
ENSG00000213442 (RPL18AP3)
ribosomal protein L18a pseudogene 3 		ENST00000462885 (RPL18AP3-001) 104265309-104265836 processed_pseudogene
ENSG00000255150 (EID3)
EP300 interacting inhibitor of differentiation 3 		ENST00000527879 (EID3-001) 104303739-104305202 protein_coding
ENSG00000257193 (RP11-818F20.4)
 ENST00000547554 (RP11-818F20.4-001) 104170395-104177659 lincRNA
ENSG00000257732 (RP11-818F20.5)
 ENST00000549807 (RP11-818F20.5-001) 104262314-104280722 antisense
CIL_0004AC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020248-ENSMUSG00000020250 CGP 10090 10:82748701-82897724
GeneTranscriptPositionBiotype
ENSMUSG00000020248 (Nfyb)
nuclear transcription factor-Y beta 		ENSMUST00000127832 (Nfyb-003) 82752416-82763663 processed_transcript
ENSMUST00000128397 (Nfyb-006) 82755068-82757307 retained_intron
ENSMUST00000129640 (Nfyb-005) 82751166-82752550 retained_intron
ENSMUST00000130911 (Nfyb-001) 82748701-82764144 protein_coding
ENSMUST00000142523 (Nfyb-002) 82752518-82763646 protein_coding
ENSMUST00000143749 (Nfyb-007) 82749287-82764101 retained_intron
ENSMUST00000145561 (Nfyb-004) 82750474-82751659 retained_intron
ENSMUSG00000020250 (Txnrd1)
thioredoxin reductase 1 		ENSMUST00000020484 (Txnrd1-201) 82859206-82897724 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004AC_0001ENSG00000120837ENST00000240055ENST00000550189ENST00000550881ENST00000551446ENST00000551727ENSG00000198431ENST00000354940ENST00000388854ENST00000397736ENST00000429002ENST00000503506ENST00000524698ENST00000525265ENST00000525566ENST00000526006ENST00000526207ENST00000526266ENST00000526390ENST00000526580ENST00000526691ENST00000526950ENST00000527335ENST00000527688ENST00000528079ENST00000529546ENST00000529751ENST00000529784ENST00000531689ENST00000531691ENST00000534282ENSG00000213442ENST00000462885ENSG00000255150ENST00000527879ENSG00000257193ENST00000547554ENSG00000257732ENST00000549807CIL_0004AC_0002ENSMUSG00000020248ENSMUST00000127832ENSMUST00000128397ENSMUST00000129640ENSMUST00000130911ENSMUST00000142523ENSMUST00000143749ENSMUST00000145561ENSMUSG00000020250ENSMUST00000020484
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004AC_0001ENSG00000120837ENST00000240055ENST00000550189ENST00000551446ENST00000551727ENSG00000198431ENST00000354940ENST00000503506ENST00000524698ENST00000525265ENST00000525566ENST00000526390ENST00000526691ENST00000526950ENST00000527688ENST00000529546ENSG00000213442ENST00000462885ENSG00000255150ENST00000527879ENSG00000257193ENST00000547554ENSG00000257732ENST00000549807CIL_0004AC_0002ENSMUSG00000020248ENSMUST00000127832ENSMUST00000129640ENSMUST00000130911ENSMUST00000142523ENSMUST00000143749ENSMUST00000145561ENSMUSG00000020250ENSMUST00000020484
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000120837 ENST00000240055 2.593±0.00 N/A 0.427±0.00 4.729±0.00 1.693±0.93 4.074±2.69 1.075±0.25 3.662±0.00 1.286±0.32 0.876±0.23 1.960±0.00 3.138±0.85 1.738±0.31 4.451±1.83
ENST00000550189 N/A N/A 2.604±0.00 N/A N/A N/A N/A 3.264±0.00 N/A N/A 6.203±0.00 5.979±0.00 N/A N/A
ENST00000550881 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551446 N/A N/A N/A N/A N/A 3.489±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551727 6.385±0.00 7.784±0.00 2.282±0.00 8.765±1.84 5.954±1.60 10.159±7.60 6.565±4.31 6.327±3.72 4.537±1.21 7.143±1.85 5.827±0.00 14.836±11.42 12.190±10.17 29.488±11.80
ENSG00000198431 ENST00000354940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.895±0.00
ENST00000388854 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000397736 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503506 N/A N/A N/A 4.415±0.00 6.506±0.00 9.755±0.00 4.786±0.00 N/A 23.947±0.00 5.247±0.00 N/A 12.467±5.09 N/A N/A
ENST00000524698 N/A N/A 2.120±0.00 4.472±0.00 N/A N/A N/A N/A N/A N/A N/A 14.768±0.00 N/A 8.205±0.00
ENST00000525265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.662±0.00 N/A
ENST00000525566 N/A N/A 1.380±0.00 5.062±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.262±0.00
ENST00000526006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526266 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526390 4.499±0.00 4.733±0.00 N/A 2.821±0.00 N/A N/A N/A N/A 2.224±0.00 N/A N/A N/A 3.163±0.00 N/A
ENST00000526580 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526691 N/A N/A N/A 2.552±0.00 1.596±0.00 6.516±3.07 3.131±1.68 14.386±0.00 17.039±0.00 10.426±5.98 3.693±0.00 9.083±3.77 5.894±1.69 7.136±0.00
ENST00000526950 N/A N/A N/A N/A 8.600±0.00 N/A N/A 3.267±0.00 N/A 6.864±0.00 N/A N/A N/A N/A
ENST00000527335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527688 N/A 3.435±0.00 N/A N/A 1.683±0.00 N/A N/A N/A N/A 3.030±0.00 N/A 6.520±0.00 N/A N/A
ENST00000528079 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529546 N/A N/A N/A N/A N/A N/A 7.086±0.00 N/A N/A N/A N/A 13.402±0.00 7.658±0.00 5.913±0.00
ENST00000529751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531689 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531691 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534282 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213442 ENST00000462885 0.270±0.00 0.343±0.00 N/A N/A 0.315±0.00 0.122±0.01 0.069±0.01 0.063±0.00 N/A 0.118±0.00 0.634±0.58 1.907±0.00 0.227±0.06 0.109±0.00
ENSG00000255150 ENST00000527879 0.686±0.00 2.042±0.00 1.255±0.00 1.837±0.25 1.443±0.31 0.806±0.26 0.431±0.07 0.644±0.20 1.200±1.14 1.311±0.16 0.257±0.13 2.169±1.02 0.875±0.41 33.573±5.97
ENSG00000257193 ENST00000547554 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.342±0.00 0.149±0.00
ENSG00000257732 ENST00000549807 N/A 0.148±0.00 N/A N/A 0.150±0.09 N/A 0.067±0.00 N/A 0.056±0.00 0.116±0.00 N/A 0.161±0.19 0.113±0.00 0.097±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020248 ENSMUST00000127832 2.593±0.00 3.358±2.38 N/A N/A 1.328±0.00 2.573±0.00 N/A 2.981±0.27 3.245±0.00 1.267±0.00 N/A 2.395±1.11 N/A N/A
ENSMUST00000128397 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.213±0.00
ENSMUST00000130911 3.936±0.58 2.140±0.35 8.633±0.54 18.496±1.57 2.721±1.22 2.352±0.64 2.607±0.49 3.799±0.95 11.794±7.69 4.335±0.46 6.226±1.89 3.478±2.41 7.092±2.52 2.152±0.11
ENSMUST00000142523 N/A N/A N/A N/A N/A N/A N/A N/A 5.911±0.76 N/A N/A N/A N/A N/A
ENSMUST00000143749 0.632±0.28 N/A N/A N/A 0.660±0.26 0.712±0.14 N/A N/A 0.868±0.00 0.580±0.11 N/A 0.710±0.28 N/A 0.398±0.07
ENSMUST00000145561 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 27.306±0.00 25.417±0.00 4.328±0.00
ENSMUSG00000020250 ENSMUST00000020484 17.774±2.27 23.819±4.25 24.108±2.09 28.932±13.39 14.350±4.04 38.190±7.92 10.330±0.71 31.548±1.38 28.429±5.50 17.683±2.59 20.203±3.26 21.690±7.08 19.307±11.31 4.559±2.70

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