C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger with KRAB and SCAN domains 17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020472 Zkscan17 10090 - 11:59485520-59526751 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000013262 Zkscan17-001 59485520-59506644 protein_coding
  ENSMUST00000101150 Zkscan17-002 59485520-59506644 protein_coding
  ENSMUST00000129941 Zkscan17-005 59504173-59506220 processed_transcript
  ENSMUST00000134522 Zkscan17-004 59499544-59506220 processed_transcript
  ENSMUST00000139093 Zkscan17-003 59504167-59526631 processed_transcript
  ENSMUST00000139707 Zkscan17-006 59525452-59526751 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000013262ENSMUST00000101150ENSMUST00000134522
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000013262 3.416±1.76 3.287±0.95 5.807±1.15 5.262±1.24 2.012±0.70 3.349±0.99 2.081±0.25 3.188±1.41 2.074±0.57 4.525±1.38 3.076±0.78 5.626±2.58 6.407±2.59 15.612±7.75
ENSMUST00000101150 N/A 1.557±0.00 N/A N/A 3.150±1.25 N/A 1.789±0.21 1.682±0.11 1.036±0.32 N/A 2.013±0.78 11.672±0.00 5.611±0.14 8.252±1.57
ENSMUST00000134522 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.896±0.00 21.651±3.48 46.082±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006TS CIL_0006TS_0002 CGP 11:59485520-59566956

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003677 IDA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0016604 IDA nuclear body
GO:0043621 IDA protein self-association
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000162714 ZNF496 zinc finger protein 496 protein_coding Homo_sapiens

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