C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger with KRAB and SCAN domains 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000013262 Zkscan17-001 ENSMUSG00000020472 10090 - 11:59485520-59506644 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000013262
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000013262 3.416±1.76 3.287±0.95 5.807±1.15 5.262±1.24 2.012±0.70 3.349±0.99 2.081±0.25 3.188±1.41 2.074±0.57 4.525±1.38 3.076±0.78 5.626±2.58 6.407±2.59 15.612±7.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006TS CIL_0006TS_0002 CGP 11:59485520-59566956

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003677 IDA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0016604 IDA nuclear body
GO:0043621 IDA protein self-association
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000292450 ZSCAN21-001 protein_coding Homo_sapiens 6e-23 113
ENST00000294753 ZNF496-001 protein_coding Homo_sapiens 0 1483
ENST00000438937 ZSCAN21-002 protein_coding Homo_sapiens 2e-23 113
ENST00000456748 ZSCAN21-004 protein_coding Homo_sapiens 6e-23 113
ENST00000461277 ZNF496-002 protein_coding Homo_sapiens 0 809
ENST00000462139 ZNF496-004 processed_transcript Homo_sapiens 0 660
ENST00000477297 ZSCAN21-003 processed_transcript Homo_sapiens 2e-23 113
ENST00000477903 ZNF496-006 processed_transcript Homo_sapiens 0 577
ENST00000478225 ZNF496-005 processed_transcript Homo_sapiens 0 695
ENST00000543588 ZSCAN21-201 protein_coding Homo_sapiens 0.0000000000002 82

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