C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger with KRAB and SCAN domains 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000101150 Zkscan17-002 ENSMUSG00000020472 10090 - 11:59485520-59506644 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000101150
Transcript ID Adrenal Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000101150 1.557±0.00 3.150±1.25 1.789±0.21 1.682±0.11 1.036±0.32 2.013±0.78 11.672±0.00 5.611±0.14 8.252±1.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006TS CIL_0006TS_0002 CGP 11:59485520-59566956

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003677 IDA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0016604 IDA nuclear body
GO:0043621 IDA protein self-association
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000294753 ZNF496-001 protein_coding Homo_sapiens 0 856
ENST00000461277 ZNF496-002 protein_coding Homo_sapiens 0 809
ENST00000462139 ZNF496-004 processed_transcript Homo_sapiens 0 660
ENST00000477903 ZNF496-006 processed_transcript Homo_sapiens 2e-29 134
ENST00000478225 ZNF496-005 processed_transcript Homo_sapiens 0 252

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