C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00039N_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000053884-ENSDARG00000015917 CGP 7955 10:28711823-28850950
GeneTranscriptPositionBiotype
ENSDARG00000015917 (rnft1)
ring finger protein, transmembrane 1 		ENSDART00000022484 (rnft1-001) 28842046-28850950 protein_coding
ENSDART00000131003 (rnft1-002) 28842078-28844028 processed_transcript
ENSDARG00000053884 (med13a)
mediator complex subunit 13a 		ENSDART00000088852 (med13a-201) 28711824-28798981 protein_coding
ENSDART00000134491 (med13a-001) 28711823-28799521 protein_coding
CIL_00039N_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034297-ENSMUSG00000020521 CGP 10090 11:86267033-86499025
GeneTranscriptPositionBiotype
ENSMUSG00000020516 (Rps6kb1)
ribosomal protein S6 kinase, polypeptide 1 		ENSMUST00000020824 (Rps6kb1-004) 86502033-86544805 retained_intron
ENSMUST00000058286 (Rps6kb1-002) 86513983-86544774 protein_coding
ENSMUST00000131194 (Rps6kb1-003) 86513618-86520039 processed_transcript
ENSMUST00000138810 (Rps6kb1-005) 86532772-86544765 protein_coding
ENSMUST00000149392 (Rps6kb1-006) 86502599-86511645 processed_transcript
ENSMUST00000151748 (Rps6kb1-007) 86519644-86532840 retained_intron
ENSMUST00000154617 (Rps6kb1-001) 86498871-86544805 protein_coding
ENSMUSG00000020521 (Rnft1)
ring finger protein, transmembrane 1 		ENSMUST00000020827 (Rnft1-001) 86484657-86499025 protein_coding
ENSMUST00000125675 (Rnft1-003) 86484685-86490511 processed_transcript
ENSMUST00000131246 (Rnft1-002) 86484730-86486105 processed_transcript
ENSMUSG00000034297 (Med13)
mediator complex subunit 13 		ENSMUST00000043624 (Med13-001) 86267033-86357602 protein_coding
ENSMUST00000136622 (Med13-002) 86272547-86278600 processed_transcript
ENSMUST00000140514 (Med13-003) 86275374-86278992 retained_intron
ENSMUST00000144983 (Med13-004) 86331006-86332183 retained_intron
ENSMUSG00000085208 (Brip1os)
BRCA1 interacting protein C-terminal helicase 1, opposite strand 		ENSMUST00000128960 (Brip1os-001) 86201370-86211192 antisense
ENSMUST00000143819 (Brip1os-002) 86201383-86304443 antisense
ENSMUSG00000088091 (Gm23667)
predicted gene, 23667 		ENSMUST00000157466 (Gm23667-201) 86408826-86408945 rRNA
ENSMUSG00000088230 (Gm25427)
predicted gene, 25427 		ENSMUST00000157605 (Gm25427-201) 86333206-86333308 misc_RNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00039N_0001ENSDARG00000015917ENSDART00000022484ENSDART00000131003ENSDARG00000053884ENSDART00000088852ENSDART00000134491CIL_00039N_0002ENSMUSG00000020516ENSMUST00000020824ENSMUST00000058286ENSMUST00000131194ENSMUST00000138810ENSMUST00000149392ENSMUST00000151748ENSMUST00000154617ENSMUSG00000020521ENSMUST00000020827ENSMUST00000125675ENSMUST00000131246ENSMUSG00000034297ENSMUST00000043624ENSMUST00000136622ENSMUST00000140514ENSMUST00000144983ENSMUSG00000085208ENSMUST00000128960ENSMUST00000143819ENSMUSG00000088091ENSMUST00000157466ENSMUSG00000088230ENSMUST00000157605
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00039N_0001ENSDARG00000015917ENSDART00000022484ENSDARG00000053884ENSDART00000088852ENSDART00000134491CIL_00039N_0002ENSMUSG00000020516ENSMUST00000020824ENSMUST00000138810ENSMUST00000149392ENSMUST00000154617ENSMUSG00000020521ENSMUST00000020827ENSMUST00000125675ENSMUSG00000034297ENSMUST00000043624ENSMUSG00000085208ENSMUST00000128960ENSMUSG00000088091ENSMUST00000157466ENSMUSG00000088230ENSMUST00000157605
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000015917 ENSDART00000022484 N/A N/A N/A 2.448±1.48 N/A N/A 15.021±7.21 13.756±6.82 0.715±0.00 N/A 2.320±0.00 N/A N/A N/A
ENSDART00000131003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000053884 ENSDART00000088852 N/A N/A N/A 6.367±1.38 N/A N/A 8.545±4.74 13.070±7.67 0.470±0.00 N/A 5.557±0.00 N/A N/A N/A
ENSDART00000134491 N/A N/A N/A 1.356±0.90 N/A N/A 1.366±0.00 1.291±0.00 0.387±0.00 N/A 1.471±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020516 ENSMUST00000020824 3.033±0.28 N/A N/A N/A 2.068±0.26 1.438±0.00 1.719±0.19 2.143±0.00 1.902±0.00 2.258±0.22 N/A 4.928±0.10 5.736±1.94 N/A
ENSMUST00000058286 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138810 N/A 14.092±3.37 N/A N/A N/A 6.895±1.65 N/A N/A 9.292±0.47 5.224±0.00 N/A 7.918±0.23 N/A N/A
ENSMUST00000149392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.567±0.00 N/A N/A
ENSMUST00000151748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154617 4.620±0.70 1.994±0.52 7.463±0.27 7.688±3.45 3.605±0.42 1.784±0.36 2.696±0.41 2.656±0.57 4.603±2.64 3.561±0.60 5.043±0.36 3.140±1.53 3.716±1.72 1.274±0.25
ENSMUSG00000020521 ENSMUST00000020827 3.338±0.63 1.587±0.44 8.338±0.12 2.860±0.88 2.611±0.33 2.036±0.63 2.559±0.19 3.086±0.63 4.042±0.45 3.079±0.24 3.750±1.50 2.602±1.14 3.781±1.51 2.448±0.31
ENSMUST00000125675 N/A N/A N/A N/A N/A 3.949±0.00 N/A 4.242±0.00 4.037±0.00 N/A N/A N/A 17.426±0.00 9.014±0.81
ENSMUST00000131246 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000034297 ENSMUST00000043624 5.991±3.26 4.549±1.11 4.229±1.07 5.939±1.96 8.004±2.72 4.802±1.02 3.375±0.42 6.174±1.48 3.310±1.45 8.672±1.61 3.523±0.73 6.075±2.85 8.023±2.30 4.305±1.68
ENSMUST00000136622 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085208 ENSMUST00000128960 5.166±1.18 4.474±0.59 7.665±0.52 6.831±0.49 7.084±1.34 7.637±0.66 2.347±0.11 6.092±0.22 5.638±2.53 6.558±0.73 N/A 7.428±1.45 6.732±2.22 N/A
ENSMUST00000143819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000088091 ENSMUST00000157466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.831±0.00
ENSMUSG00000088230 ENSMUST00000157605 N/A N/A N/A 44.833±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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