C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gametogenetin binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108081 Ggnbp2-007 ENSMUSG00000020530 10090 - 11:84832361-84870789 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000108081
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000108081 5.567±1.06 5.279±1.06 11.372±0.04 9.161±1.37 5.501±1.02 5.583±2.14 3.316±0.34 4.194±1.28 14.711±12.94 5.138±1.64 3.822±1.85 6.276±2.06 12.004±2.62 26.165±0.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YB CIL_0007YB_0004 VISTA 11:84425827-85026602
CIL_00085R CIL_00085R_0002 VISTA 11:84466073-85066769

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0008150 ND biological_process
GO:0030154 IEA cell differentiation
GO:0031410 IEA cytoplasmic vesicle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000611219 GGNBP2-004 protein_coding Homo_sapiens 0 479
ENST00000612563 GGNBP2-007 retained_intron Homo_sapiens 0 283
ENST00000613102 GGNBP2-001 protein_coding Homo_sapiens 0 3875
ENST00000615952 GGNBP2-008 protein_coding Homo_sapiens 0 438
ENST00000616019 GGNBP2-006 protein_coding Homo_sapiens 0 859
ENST00000617860 GGNBP2-003 retained_intron Homo_sapiens 0 1615
ENST00000618837 GGNBP2-002 retained_intron Homo_sapiens 0 2244
ENST00000619573 GGNBP2-005 retained_intron Homo_sapiens 0 1297
ENST00000620927 GGNBP2-009 retained_intron Homo_sapiens 0 913
ENST00000621686 GGNBP2-201 protein_coding Homo_sapiens 0 3873

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