C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gametogenetin binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172405 Ggnbp2-201 ENSMUSG00000020530 10090 - 11:84832361-84870738 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartKidneyLiverMuscleOvaryPlacentaENSMUST00000172405
Transcript ID Bladder Brain Breast Heart Kidney Liver Muscle Ovary Placenta
ENSMUST00000172405 7.188±0.00 9.818±4.06 8.488±0.00 2.640±0.41 1.698±0.00 8.088±1.56 1.597±0.52 11.723±0.24 8.966±3.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YB CIL_0007YB_0004 VISTA 11:84425827-85026602
CIL_00085R CIL_00085R_0002 VISTA 11:84466073-85066769

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0008150 ND biological_process
GO:0030154 IEA cell differentiation
GO:0031410 IEA cytoplasmic vesicle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000611219 GGNBP2-004 protein_coding Homo_sapiens 0 307
ENST00000612563 GGNBP2-007 retained_intron Homo_sapiens 0 283
ENST00000613102 GGNBP2-001 protein_coding Homo_sapiens 0 3703
ENST00000615952 GGNBP2-008 protein_coding Homo_sapiens 0 438
ENST00000616019 GGNBP2-006 protein_coding Homo_sapiens 0 861
ENST00000617860 GGNBP2-003 retained_intron Homo_sapiens 0 1443
ENST00000618837 GGNBP2-002 retained_intron Homo_sapiens 0 2089
ENST00000619573 GGNBP2-005 retained_intron Homo_sapiens 0 1297
ENST00000620927 GGNBP2-009 retained_intron Homo_sapiens 0 913
ENST00000621686 GGNBP2-201 protein_coding Homo_sapiens 0 3701

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