C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuronal cell adhesion molecule
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110748 Nrcam-202 ENSMUSG00000020598 10090 + 12:44328885-44601846 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110748
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110748 0.124±0.03 0.100±0.05 0.033±0.01 2.910±0.08 0.121±0.05 0.076±0.03 0.023±0.01 0.225±0.12 0.015±0.01 1.083±0.63 0.040±0.01 2.912±2.15 0.687±0.68 0.113±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PF CIL_0008PF_0002 VISTA 12:44102519-44705770
CIL_0008CE CIL_0008CE_0002 VISTA 12:44102792-44705590
CIL_00057O CIL_00057O_0002 CGP 12:44221370-44601846

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0007411 IDA axon guidance
GO:0007417 IDA central nervous system development
GO:0008104 IDA protein localization
GO:0010975 IMP regulation of neuron projection development
GO:0016021 IEA integral component of membrane
GO:0016337 IDA single organismal cell-cell adhesion
GO:0019227 IMP neuronal action potential propagation
GO:0030424 IDA axon
GO:0030506 ISS ankyrin binding
GO:0031290 IMP retinal ganglion cell axon guidance
GO:0034113 IGI heterotypic cell-cell adhesion
GO:0045162 ISS clustering of voltage-gated sodium channels
GO:0045202 IDA synapse
GO:0086080 IGI protein binding involved in heterotypic cell-cell adhesion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000351718 NRCAM-003 protein_coding Homo_sapiens 0 4800
ENST00000379022 NRCAM-201 protein_coding Homo_sapiens 0 2087
ENST00000379024 NRCAM-001 protein_coding Homo_sapiens 0 2386
ENST00000379028 NRCAM-202 protein_coding Homo_sapiens 0 2257
ENST00000413765 NRCAM-203 protein_coding Homo_sapiens 0 2386
ENST00000415105 NRCAM-012 retained_intron Homo_sapiens 0 616
ENST00000417701 NRCAM-005 protein_coding Homo_sapiens 0 1644
ENST00000418239 NRCAM-018 protein_coding Homo_sapiens 0 255
ENST00000419936 NRCAM-015 protein_coding Homo_sapiens 0 479
ENST00000425651 NRCAM-006 protein_coding Homo_sapiens 0 2115
ENST00000442580 NRCAM-017 protein_coding Homo_sapiens 0 420
ENST00000445634 NRCAM-011 protein_coding Homo_sapiens 0 566
ENST00000456431 NRCAM-016 protein_coding Homo_sapiens 0 481
ENST00000465585 NRCAM-013 processed_transcript Homo_sapiens 0 612
ENST00000489800 NRCAM-009 retained_intron Homo_sapiens 0 361
ENST00000522550 NRCAM-007 processed_transcript Homo_sapiens 0 841
ENST00000613830 NRCAM-204 protein_coding Homo_sapiens 0 2808

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