C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMT3 suppressor of mif two 3 homolog 2 (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153892 Sumo2-001 ENSMUSG00000020738 10090 - 11:115523102-115536276 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000153892
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000153892 42.589±5.26 29.018±3.09 128.655±8.82 223.571±149.36 27.883±9.89 25.255±0.74 36.862±2.29 40.085±7.90 93.732±80.39 47.506±3.77 67.009±2.72 28.085±7.09 93.710±63.26 30.643±15.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0002 VISTA 11:115369788-115971497
CIL_0001HE CIL_0001HE_0002 CGP 11:115497353-115536276
CIL_0007IA CIL_0007IA_0002 CGP 11:115523102-115583985

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0016605 ISS PML body
GO:0016925 IDA:ISS protein sumoylation
GO:0019789 IDA SUMO ligase activity
GO:0031625 ISS ubiquitin protein ligase binding
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314523 SUMO2-002 protein_coding Homo_sapiens 0 627
ENST00000326669 SUMO4-001 protein_coding Homo_sapiens 0 987
ENST00000404494 RP3-509I19.6-001 transcribed_processed_pseudogene Homo_sapiens 0 261
ENST00000405924 SUMO2P12-001 processed_pseudogene Homo_sapiens 1.99993e-41 171
ENST00000414746 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 431
ENST00000415468 AC079809.2-001 processed_pseudogene Homo_sapiens 0 311
ENST00000417139 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 431
ENST00000418008 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 431
ENST00000420826 SUMO2-001 protein_coding Homo_sapiens 0 1404
ENST00000427515 RP11-184I16.3-001 processed_pseudogene Homo_sapiens 0 281
ENST00000428065 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 431
ENST00000428741 RP11-4K3__A.3-001 processed_pseudogene Homo_sapiens 0 289
ENST00000434672 SUMO2P8-001 processed_pseudogene Homo_sapiens 0 355
ENST00000436431 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 431
ENST00000438311 SUMO2P3-001 processed_pseudogene Homo_sapiens 0 407
ENST00000443604 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 431
ENST00000445436 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 431
ENST00000452006 SUMO2P10-001 processed_pseudogene Homo_sapiens 0 348
ENST00000455040 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 431
ENST00000456482 SUMO2P2-001 processed_pseudogene Homo_sapiens 7e-19 97
ENST00000504193 SUMO2P4-002 processed_pseudogene Homo_sapiens 0 344
ENST00000504438 SUMO2P17-001 transcribed_processed_pseudogene Homo_sapiens 0 411
ENST00000505273 SUMO2P6-001 processed_pseudogene Homo_sapiens 0 407
ENST00000506790 SUMO2P5-001 processed_pseudogene Homo_sapiens 6.02558e-44 180
ENST00000508743 SUMO2P17-002 processed_transcript Homo_sapiens 0 226
ENST00000511179 SUMO2P7-001 processed_pseudogene Homo_sapiens 0 350
ENST00000518873 SUMO2P18-001 processed_pseudogene Homo_sapiens 0.000001 57
ENST00000520803 SUMO2P20-001 processed_pseudogene Homo_sapiens 0 357
ENST00000536192 RP1-241P17.4-001 processed_pseudogene Homo_sapiens 0 457
ENST00000572284 RP3-509I19.6-002 processed_transcript Homo_sapiens 0 372
ENST00000578238 SUMO2-003 protein_coding Homo_sapiens 0 477
ENST00000588843 RP11-49K24.5-001 processed_pseudogene Homo_sapiens 0 348

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