C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMT3 suppressor of mif two 3 homolog 2 (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000050672 Sumo2-005 ENSMUSG00000020738 10090 - 11:115534379-115536189 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000050672
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000050672 228.031±0.00 301.252±0.00 317.966±140.37 121.878±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0002 VISTA 11:115369788-115971497
CIL_0001HE CIL_0001HE_0002 CGP 11:115497353-115536276
CIL_0007IA CIL_0007IA_0002 CGP 11:115523102-115583985

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314523 SUMO2-002 protein_coding Homo_sapiens 0 355
ENST00000326669 SUMO4-001 protein_coding Homo_sapiens 0 296
ENST00000404494 RP3-509I19.6-001 transcribed_processed_pseudogene Homo_sapiens 1e-31 139
ENST00000414746 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 257
ENST00000415468 AC079809.2-001 processed_pseudogene Homo_sapiens 0 196
ENST00000417139 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 257
ENST00000418008 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 257
ENST00000420826 SUMO2-001 protein_coding Homo_sapiens 0 357
ENST00000427515 RP11-184I16.3-001 processed_pseudogene Homo_sapiens 2e-35 152
ENST00000428065 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 257
ENST00000434672 SUMO2P8-001 processed_pseudogene Homo_sapiens 0 204
ENST00000436431 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 257
ENST00000438311 SUMO2P3-001 processed_pseudogene Homo_sapiens 0 222
ENST00000443604 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 257
ENST00000445436 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 257
ENST00000452006 SUMO2P10-001 processed_pseudogene Homo_sapiens 0 207
ENST00000455040 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 257
ENST00000456482 SUMO2P2-001 processed_pseudogene Homo_sapiens 7e-19 97
ENST00000504193 SUMO2P4-002 processed_pseudogene Homo_sapiens 0 209
ENST00000504438 SUMO2P17-001 transcribed_processed_pseudogene Homo_sapiens 0 246
ENST00000505273 SUMO2P6-001 processed_pseudogene Homo_sapiens 0 241
ENST00000506790 SUMO2P5-001 processed_pseudogene Homo_sapiens 8e-28 126
ENST00000511179 SUMO2P7-001 processed_pseudogene Homo_sapiens 0 196
ENST00000518873 SUMO2P18-001 processed_pseudogene Homo_sapiens 0.000001 57
ENST00000520803 SUMO2P20-001 processed_pseudogene Homo_sapiens 0 202
ENST00000536192 RP1-241P17.4-001 processed_pseudogene Homo_sapiens 0 268
ENST00000572284 RP3-509I19.6-002 processed_transcript Homo_sapiens 2e-31 139
ENST00000578238 SUMO2-003 protein_coding Homo_sapiens 0 237
ENST00000588843 RP11-49K24.5-001 processed_pseudogene Homo_sapiens 0 207

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