C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMT3 suppressor of mif two 3 homolog 2 (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121185 Sumo2-003 ENSMUSG00000020738 10090 - 11:115523102-115535817 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastOvaryPlacentaENSMUST00000121185
Transcript ID Breast Ovary Placenta
ENSMUST00000121185 37.109±0.00 132.834±4.98 39.939±12.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0002 VISTA 11:115369788-115971497
CIL_0001HE CIL_0001HE_0002 CGP 11:115497353-115536276
CIL_0007IA CIL_0007IA_0002 CGP 11:115523102-115583985

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0016925 IDA protein sumoylation
GO:0019789 IDA SUMO ligase activity
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314523 SUMO2-002 protein_coding Homo_sapiens 0 627
ENST00000326669 SUMO4-001 protein_coding Homo_sapiens 0 872
ENST00000404494 RP3-509I19.6-001 transcribed_processed_pseudogene Homo_sapiens 0 261
ENST00000405924 SUMO2P12-001 processed_pseudogene Homo_sapiens 1.99993e-41 171
ENST00000414746 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 409
ENST00000415468 AC079809.2-001 processed_pseudogene Homo_sapiens 0 305
ENST00000417139 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 409
ENST00000418008 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 409
ENST00000420826 SUMO2-001 protein_coding Homo_sapiens 0 1182
ENST00000427515 RP11-184I16.3-001 processed_pseudogene Homo_sapiens 0 281
ENST00000428065 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 409
ENST00000428741 RP11-4K3__A.3-001 processed_pseudogene Homo_sapiens 0 274
ENST00000434672 SUMO2P8-001 processed_pseudogene Homo_sapiens 0 344
ENST00000436431 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 409
ENST00000438311 SUMO2P3-001 processed_pseudogene Homo_sapiens 0 388
ENST00000443604 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 409
ENST00000445436 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 409
ENST00000452006 SUMO2P10-001 processed_pseudogene Homo_sapiens 0 333
ENST00000455040 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 409
ENST00000456482 SUMO2P2-001 processed_pseudogene Homo_sapiens 1e-16 90
ENST00000504193 SUMO2P4-002 processed_pseudogene Homo_sapiens 0 333
ENST00000504438 SUMO2P17-001 transcribed_processed_pseudogene Homo_sapiens 0 370
ENST00000505273 SUMO2P6-001 processed_pseudogene Homo_sapiens 0 379
ENST00000506790 SUMO2P5-001 processed_pseudogene Homo_sapiens 6.02558e-44 180
ENST00000508743 SUMO2P17-002 processed_transcript Homo_sapiens 0 226
ENST00000511179 SUMO2P7-001 processed_pseudogene Homo_sapiens 0 339
ENST00000518873 SUMO2P18-001 processed_pseudogene Homo_sapiens 0.000001 57
ENST00000520803 SUMO2P20-001 processed_pseudogene Homo_sapiens 0 340
ENST00000536192 RP1-241P17.4-001 processed_pseudogene Homo_sapiens 0 424
ENST00000572284 RP3-509I19.6-002 processed_transcript Homo_sapiens 0 372
ENST00000578238 SUMO2-003 protein_coding Homo_sapiens 0 475
ENST00000588843 RP11-49K24.5-001 processed_pseudogene Homo_sapiens 0 331

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