C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: golgi associated, gamma adaptin ear containing, ARF binding protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020740 Gga3 10090 - 11:115584255-115604051 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000019135 Gga3-001 115584255-115604051 protein_coding
  ENSMUST00000106508 Gga3-002 115584255-115604051 protein_coding
  ENSMUST00000123485 Gga3-010 115585704-115589055 processed_transcript
  ENSMUST00000123831 Gga3-009 115587936-115603876 processed_transcript
  ENSMUST00000125097 Gga3-007 115591642-115603893 protein_coding
  ENSMUST00000128437 Gga3-006 115585787-115603884 processed_transcript
  ENSMUST00000132503 Gga3-005 115592517-115603880 processed_transcript
  ENSMUST00000136790 Gga3-012 115587585-115588027 processed_transcript
  ENSMUST00000148782 Gga3-008 115588477-115603888 processed_transcript
  ENSMUST00000149814 Gga3-004 115592499-115603724 processed_transcript
  ENSMUST00000154832 Gga3-011 115584364-115589521 processed_transcript
  ENSMUST00000156173 Gga3-003 115584255-115604051 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000019135ENSMUST00000106508ENSMUST00000148782ENSMUST00000154832
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000019135 9.030±0.31 N/A 9.594±1.90 10.647±1.18 8.668±0.44 6.455±0.52 4.324±0.67 6.571±0.50 7.300±1.41 8.275±0.87 4.561±0.70 7.239±1.02 8.027±1.49
ENSMUST00000106508 N/A N/A N/A 8.941±0.00 N/A N/A N/A N/A N/A N/A N/A 6.669±0.00 N/A
ENSMUST00000148782 N/A N/A N/A 27.490±0.00 N/A N/A N/A N/A N/A N/A N/A 21.365±0.00 11.705±0.00
ENSMUST00000154832 8.349±0.06 8.502±1.85 3.688±0.03 5.237±0.91 9.230±3.82 5.346±1.51 N/A N/A N/A 6.685±1.16 N/A 7.264±2.25 3.094±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0002 VISTA 11:115369788-115971497
CIL_0007IW CIL_0007IW_0002 CGP 11:115564434-115604051
CIL_0007I1 CIL_0007I1_0002 CGP 11:115584255-115608036

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005768 IEA endosome
GO:0005802 IEA trans-Golgi network
GO:0006886 IEA intracellular protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0030131 IEA clathrin adaptor complex
GO:0030306 IEA ADP-ribosylation factor binding
GO:0045732 IGI positive regulation of protein catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013479 gga3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 protein_coding Danio_rerio
ENSDARG00000058987 GGA3 (2 of 2) golgi-associated, gamma adaptin ear containing, ARF binding protein 3 protein_coding Danio_rerio
ENSG00000125447 GGA3 golgi-associated, gamma adaptin ear containing, ARF binding protein 3 protein_coding Homo_sapiens

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