C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: golgi associated, gamma adaptin ear containing, ARF binding protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000019135 Gga3-001 ENSMUSG00000020740 10090 - 11:115584255-115604051 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000019135
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000019135 9.030±0.31 9.594±1.90 10.647±1.18 8.668±0.44 6.455±0.52 4.324±0.67 6.571±0.50 7.300±1.41 8.275±0.87 4.561±0.70 7.239±1.02 8.027±1.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0002 VISTA 11:115369788-115971497
CIL_0007IW CIL_0007IW_0002 CGP 11:115564434-115604051
CIL_0007I1 CIL_0007I1_0002 CGP 11:115584255-115608036

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005768 IEA endosome
GO:0005802 IEA trans-Golgi network
GO:0006886 IEA intracellular protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0030131 IEA clathrin adaptor complex
GO:0030306 IEA ADP-ribosylation factor binding
GO:0045732 IGI positive regulation of protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000325180 GGA1-024 protein_coding Homo_sapiens 4e-30 137
ENST00000343632 GGA1-001 protein_coding Homo_sapiens 6e-30 137
ENST00000381756 GGA1-002 protein_coding Homo_sapiens 4e-30 137
ENST00000406772 GGA1-003 protein_coding Homo_sapiens 6e-30 137
ENST00000460957 GGA1-022 retained_intron Homo_sapiens 1e-30 137
ENST00000537686 GGA3-002 protein_coding Homo_sapiens 0 2165
ENST00000538886 GGA3-001 protein_coding Homo_sapiens 0 1694
ENST00000577435 GGA3-012 nonsense_mediated_decay Homo_sapiens 2e-17 94
ENST00000578208 GGA3-018 retained_intron Homo_sapiens 0 268
ENST00000578348 GGA3-004 protein_coding Homo_sapiens 0 1450
ENST00000578773 GGA3-021 nonsense_mediated_decay Homo_sapiens 0 316
ENST00000580646 GGA3-020 nonsense_mediated_decay Homo_sapiens 0 503
ENST00000582486 GGA3-006 protein_coding Homo_sapiens 0 1796
ENST00000582717 GGA3-005 protein_coding Homo_sapiens 0 1945
ENST00000583282 GGA3-019 protein_coding Homo_sapiens 0 399
ENST00000583667 GGA3-023 retained_intron Homo_sapiens 6.99949e-42 174
ENST00000584550 GGA3-022 nonsense_mediated_decay Homo_sapiens 0 460
ENST00000613421 GGA3-007 retained_intron Homo_sapiens 0 922
ENST00000614198 GGA3-010 retained_intron Homo_sapiens 0 647
ENST00000621217 GGA3-008 nonsense_mediated_decay Homo_sapiens 0 841
ENST00000621870 GGA3-003 nonsense_mediated_decay Homo_sapiens 0 2043

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