C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: golgi-associated, gamma adaptin ear containing, ARF binding protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000125447 GGA3 9606 - 17:75236599-75262363 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000537686 GGA3-002 75236599-75261804 protein_coding
  ENST00000538886 GGA3-001 75236599-75261600 protein_coding
  ENST00000577435 GGA3-012 75242889-75261617 nonsense_mediated_decay
  ENST00000578208 GGA3-018 75238357-75238985 retained_intron
  ENST00000578348 GGA3-004 75237284-75262361 protein_coding
  ENST00000578773 GGA3-021 75238246-75239551 nonsense_mediated_decay
  ENST00000578896 GGA3-016 75240949-75242368 retained_intron
  ENST00000579743 GGA3-011 75243517-75262358 protein_coding
  ENST00000580646 GGA3-020 75237522-75239538 nonsense_mediated_decay
  ENST00000580799 GGA3-013 75241669-75261593 protein_coding
  ENST00000582232 GGA3-017 75240794-75241733 retained_intron
  ENST00000582376 GGA3-014 75243135-75261593 nonsense_mediated_decay
  ENST00000582486 GGA3-006 75237427-75262361 protein_coding
  ENST00000582717 GGA3-005 75238238-75262363 protein_coding
  ENST00000582821 GGA3-009 75241865-75261590 retained_intron
  ENST00000583282 GGA3-019 75237526-75239081 protein_coding
  ENST00000583667 GGA3-023 75238965-75240437 retained_intron
  ENST00000584243 GGA3-015 75242884-75261585 nonsense_mediated_decay
  ENST00000584550 GGA3-022 75238179-75239545 nonsense_mediated_decay
  ENST00000613421 GGA3-007 75236602-75261623 retained_intron
  ENST00000614198 GGA3-010 75236600-75240450 retained_intron
  ENST00000621217 GGA3-008 75236599-75261621 nonsense_mediated_decay
  ENST00000621870 GGA3-003 75236599-75261600 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000537686ENST00000538886ENST00000580799ENST00000582717ENST00000613421ENST00000621870
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000537686 N/A N/A N/A 3.202±0.00 N/A N/A N/A N/A N/A N/A N/A 6.896±0.00 6.285±0.00 N/A
ENST00000538886 6.198±0.00 9.380±0.00 N/A 4.498±0.00 2.991±1.55 4.222±0.00 N/A 5.823±0.00 N/A 8.610±0.00 10.909±0.00 6.526±0.11 5.386±0.41 7.752±0.00
ENST00000580799 N/A N/A N/A N/A 7.578±0.00 N/A N/A N/A N/A 8.503±0.00 N/A N/A N/A N/A
ENST00000582717 N/A N/A N/A N/A N/A N/A N/A 1.280±0.00 1.704±0.00 N/A N/A 2.464±0.00 N/A 13.775±0.00
ENST00000613421 N/A 4.272±0.00 1.036±0.00 N/A N/A N/A 1.487±0.00 N/A N/A 1.708±0.00 N/A 1.496±0.00 N/A N/A
ENST00000621870 N/A N/A N/A N/A N/A 1.760±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0001 VISTA 17:75051738-75652852
CIL_0007IW CIL_0007IW_0001 CGP 17:75205659-75262363
CIL_0007I1 CIL_0007I1_0001 CGP 17:75236599-75266373

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005768 IEA endosome
GO:0005802 IEA:IDA trans-Golgi network
GO:0006886 IEA:NAS intracellular protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0030131 IEA clathrin adaptor complex
GO:0030306 IEA:IDA ADP-ribosylation factor binding
GO:0045732 IEA positive regulation of protein catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013479 gga3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 protein_coding Danio_rerio
ENSDARG00000058987 GGA3 (2 of 2) golgi-associated, gamma adaptin ear containing, ARF binding protein 3 protein_coding Danio_rerio
ENSMUSG00000020740 Gga3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 protein_coding Mus_musculus

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