C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: signal recognition particle 68
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020780 Srp68 10090 - 11:116245166-116274217 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021133 Srp68-001 116245166-116274217 protein_coding
  ENSMUST00000106425 Srp68-002 116245166-116274135 protein_coding
  ENSMUST00000127205 Srp68-003 116245166-116274217 processed_transcript
  ENSMUST00000128808 Srp68-004 116248796-116261338 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021133ENSMUST00000106425ENSMUST00000127205
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021133 14.225±4.36 3.360±1.01 34.789±2.22 21.551±2.09 5.845±1.74 8.718±3.03 11.725±0.37 13.300±3.21 22.054±12.64 11.503±3.04 32.561±1.41 18.766±9.26 42.478±15.52 20.412±4.35
ENSMUST00000106425 3.745±0.78 3.367±0.55 N/A 3.412±0.00 5.304±2.27 4.244±0.31 N/A 4.558±1.14 3.863±0.12 2.727±0.00 N/A 6.889±2.04 3.829±0.00 N/A
ENSMUST00000127205 N/A 2.407±0.00 N/A N/A 2.980±0.00 N/A N/A N/A N/A N/A N/A N/A 7.217±0.00 3.818±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WF CIL_0008WF_0002 VISTA 11:116019003-116619995
CIL_00078N CIL_00078N_0002 CGP 11:116220559-116274217

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005047 IEA signal recognition particle binding
GO:0005634 IEA nucleus
GO:0005786 IEA signal recognition particle, endoplasmic reticulum targeting
GO:0006614 IEA SRP-dependent cotranslational protein targeting to membrane
GO:0008312 IEA 7S RNA binding
GO:0030942 IEA endoplasmic reticulum signal peptide binding
GO:0042493 IEA response to drug
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020820 srp68 signal recognition particle 68 protein_coding Danio_rerio
ENSG00000167881 SRP68 signal recognition particle 68kDa protein_coding Homo_sapiens

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