C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal recognition particle 68
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021133 Srp68-001 ENSMUSG00000020780 10090 - 11:116245166-116274217 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021133
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021133 14.225±4.36 3.360±1.01 34.789±2.22 21.551±2.09 5.845±1.74 8.718±3.03 11.725±0.37 13.300±3.21 22.054±12.64 11.503±3.04 32.561±1.41 18.766±9.26 42.478±15.52 20.412±4.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WF CIL_0008WF_0002 VISTA 11:116019003-116619995
CIL_00078N CIL_00078N_0002 CGP 11:116220559-116274217

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005047 IEA signal recognition particle binding
GO:0005634 IEA nucleus
GO:0005786 IEA signal recognition particle, endoplasmic reticulum targeting
GO:0006614 IEA SRP-dependent cotranslational protein targeting to membrane
GO:0008312 IEA 7S RNA binding
GO:0030942 IEA endoplasmic reticulum signal peptide binding
GO:0042493 IEA response to drug
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307877 SRP68-001 protein_coding Homo_sapiens 0 2333
ENST00000539137 SRP68-002 protein_coding Homo_sapiens 0 1908
ENST00000542536 SRP68-004 processed_transcript Homo_sapiens 0 1170
ENST00000585539 SRP68-010 processed_transcript Homo_sapiens 0 193
ENST00000586859 SRP68-013 retained_intron Homo_sapiens 0 307
ENST00000588643 SRP68-006 retained_intron Homo_sapiens 0 459
ENST00000591272 SRP68-008 nonsense_mediated_decay Homo_sapiens 0 531
ENST00000592704 SRP68-009 nonsense_mediated_decay Homo_sapiens 0 2037
ENST00000602720 SRP68-201 protein_coding Homo_sapiens 0 1170

Loading