C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal recognition particle 68
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106425 Srp68-002 ENSMUSG00000020780 10090 - 11:116245166-116274135 protein_coding

Mus musculus EnsemblGRCm38

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungOvaryPlacentaENSMUST00000106425
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Ovary Placenta
ENSMUST00000106425 3.745±0.78 3.367±0.55 3.412±0.00 5.304±2.27 4.244±0.31 4.558±1.14 3.863±0.12 2.727±0.00 6.889±2.04 3.829±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WF CIL_0008WF_0002 VISTA 11:116019003-116619995
CIL_00078N CIL_00078N_0002 CGP 11:116220559-116274217

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005047 IEA signal recognition particle binding
GO:0005786 IEA signal recognition particle, endoplasmic reticulum targeting
GO:0006614 IEA SRP-dependent cotranslational protein targeting to membrane
GO:0008312 IEA 7S RNA binding
GO:0030942 IEA endoplasmic reticulum signal peptide binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307877 SRP68-001 protein_coding Homo_sapiens 0 1905
ENST00000539137 SRP68-002 protein_coding Homo_sapiens 0 2165
ENST00000542536 SRP68-004 processed_transcript Homo_sapiens 0 1170
ENST00000585539 SRP68-010 processed_transcript Homo_sapiens 0 193
ENST00000586859 SRP68-013 retained_intron Homo_sapiens 0 307
ENST00000588643 SRP68-006 retained_intron Homo_sapiens 0 459
ENST00000591272 SRP68-008 nonsense_mediated_decay Homo_sapiens 0 217
ENST00000592704 SRP68-009 nonsense_mediated_decay Homo_sapiens 0 1905
ENST00000602720 SRP68-201 protein_coding Homo_sapiens 0 1170

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