C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: upstream binding transcription factor, RNA polymerase I
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020923 Ubtf 10090 - 11:102304560-102319742 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000006754 Ubtf-001 102305924-102319096 protein_coding
  ENSMUST00000079589 Ubtf-006 102305924-102316680 protein_coding
  ENSMUST00000107115 Ubtf-005 102305924-102316704 protein_coding
  ENSMUST00000107117 Ubtf-003 102305924-102317871 protein_coding
  ENSMUST00000107119 Ubtf-008 102305993-102317287 protein_coding
  ENSMUST00000107123 Ubtf-011 102306298-102317635 protein_coding
  ENSMUST00000128016 Ubtf-004 102313609-102316705 protein_coding
  ENSMUST00000146896 Ubtf-012 102311755-102316675 protein_coding
  ENSMUST00000173870 Ubtf-007 102306486-102319742 protein_coding
  ENSMUST00000174302 Ubtf-002 102304560-102319096 protein_coding
  ENSMUST00000174400 Ubtf-009 102309040-102309908 retained_intron
  ENSMUST00000174726 Ubtf-010 102308530-102309440 retained_intron
  ENSMUST00000178839 Ubtf-201 102304561-102319096 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000006754ENSMUST00000079589ENSMUST00000107115ENSMUST00000107117ENSMUST00000107119ENSMUST00000107123ENSMUST00000173870ENSMUST00000174302ENSMUST00000174726ENSMUST00000178839
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000006754 4.167±0.00 5.724±1.25 N/A N/A 7.745±3.31 5.998±0.82 1.632±0.00 N/A 2.228±0.52 5.188±0.01 N/A 6.881±2.47 N/A N/A
ENSMUST00000079589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.162±0.00
ENSMUST00000107115 N/A N/A N/A N/A N/A N/A N/A N/A 8.272±3.68 N/A N/A N/A N/A N/A
ENSMUST00000107117 6.019±2.14 8.081±3.18 6.853±1.69 9.328±1.69 5.746±0.41 6.062±1.87 1.873±0.05 5.761±1.45 3.998±1.60 5.334±1.30 N/A 7.905±1.28 4.884±0.28 2.038±0.67
ENSMUST00000107119 6.321±1.45 N/A 7.368±2.92 10.754±4.72 8.969±0.09 3.643±0.00 4.903±0.99 8.953±1.56 4.639±1.63 6.201±0.87 9.417±1.05 17.784±2.66 13.541±7.40 0.650±0.00
ENSMUST00000107123 N/A N/A 9.100±3.13 26.117±24.02 2.919±0.00 N/A 1.762±0.18 N/A 13.972±8.94 N/A 3.217±1.03 38.492±22.73 24.676±20.13 4.347±2.72
ENSMUST00000173870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.839±0.00 N/A N/A N/A
ENSMUST00000174302 4.208±0.83 N/A 3.855±0.00 8.523±0.00 3.577±0.56 4.581±0.48 1.761±0.34 3.832±0.89 5.200±3.46 4.836±0.00 N/A 4.745±1.31 3.599±1.37 1.761±0.73
ENSMUST00000174726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 136.511±0.00 N/A 26.699±0.00
ENSMUST00000178839 4.185±1.32 5.627±0.29 5.898±1.13 N/A 4.463±1.05 5.120±1.90 1.862±0.32 3.912±1.42 3.678±1.67 4.692±1.06 1.555±0.16 7.391±2.33 2.514±0.00 1.778±0.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0004D4 CIL_0004D4_0003 CGP 11:102289300-102319742
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0004D5 CIL_0004D5_0003 CGP 11:102304560-102366203

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000183 IMP chromatin silencing at rDNA
GO:0001650 IEA fibrillar center
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005730 IDA nucleolus
GO:0006362 IDA transcription elongation from RNA polymerase I promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035066 ubtf upstream binding transcription factor, RNA polymerase I protein_coding Danio_rerio

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