C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: upstream binding transcription factor, RNA polymerase I
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000006754 Ubtf-001 ENSMUSG00000020923 10090 - 11:102305924-102319096 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLiverLungOvaryENSMUST00000006754
Transcript ID Adipose Adrenal Breast Colon Heart Liver Lung Ovary
ENSMUST00000006754 4.167±0.00 5.724±1.25 7.745±3.31 5.998±0.82 1.632±0.00 2.228±0.52 5.188±0.01 6.881±2.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0004D4 CIL_0004D4_0003 CGP 11:102289300-102319742
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0004D5 CIL_0004D5_0003 CGP 11:102304560-102366203

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000183 IMP chromatin silencing at rDNA
GO:0005515 IPI protein binding
GO:0005730 IDA nucleolus
GO:0006362 IDA transcription elongation from RNA polymerase I promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000141757 ubtfl-010 protein_coding Danio_rerio 2e-25 122
ENSDART00000136758 ubtfl-008 protein_coding Danio_rerio 3e-18 99
ENSDART00000056634 ubtfl-001 protein_coding Danio_rerio 3e-18 99
ENSDART00000144758 ubtfl-009 protein_coding Danio_rerio 0.00000000000002 86
ENST00000302904 UBTF-002 protein_coding Homo_sapiens 0 2320
ENST00000343638 UBTF-001 protein_coding Homo_sapiens 0 3672
ENST00000393606 UBTF-004 protein_coding Homo_sapiens 0 3049
ENST00000428234 UBTFL11-001 processed_pseudogene Homo_sapiens 0 529
ENST00000436088 UBTF-005 protein_coding Homo_sapiens 0 2039
ENST00000526094 UBTF-007 protein_coding Homo_sapiens 0 3018
ENST00000527034 UBTF-014 protein_coding Homo_sapiens 0 3432
ENST00000529042 UBTF-010 retained_intron Homo_sapiens 0 300
ENST00000529373 UBTF-011 protein_coding Homo_sapiens 0 832
ENST00000529383 UBTF-008 protein_coding Homo_sapiens 0 1951
ENST00000530828 UBTF-009 protein_coding Homo_sapiens 0 442
ENST00000531368 UBTF-012 retained_intron Homo_sapiens 0 440
ENST00000533177 UBTF-006 protein_coding Homo_sapiens 0 3317
ENST00000537550 UBTF-015 processed_transcript Homo_sapiens 0 774

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