C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | upstream binding transcription factor, RNA polymerase I | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000146896  |
Ubtf-012 |
ENSMUSG00000020923 |
10090 | - |
11:102311755-102316675  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0009B6 | CIL_0009B6_0002 | VISTA | 11:102063033-102664797 |
| CIL_0004D4 | CIL_0004D4_0003 | CGP | 11:102289300-102319742 |
| CIL_0007ST | CIL_0007ST_0002 | VISTA | 11:102292756-102896210 |
| CIL_0004D5 | CIL_0004D5_0003 | CGP | 11:102304560-102366203 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000183 | IMP | chromatin silencing at rDNA |
| GO:0005515 | IPI | protein binding |
| GO:0005730 | IDA | nucleolus |
| GO:0006362 | IDA | transcription elongation from RNA polymerase I promoter |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000302904
|
UBTF-002 | protein_coding | Homo_sapiens | 0 | 444 |
|
ENST00000343638
|
UBTF-001 | protein_coding | Homo_sapiens | 0 | 442 |
|
ENST00000393606
|
UBTF-004 | protein_coding | Homo_sapiens | 0 | 442 |
|
ENST00000436088
|
UBTF-005 | protein_coding | Homo_sapiens | 0 | 442 |
|
ENST00000526094
|
UBTF-007 | protein_coding | Homo_sapiens | 0 | 466 |
|
ENST00000527034
|
UBTF-014 | protein_coding | Homo_sapiens | 0 | 442 |
|
ENST00000529042
|
UBTF-010 | retained_intron | Homo_sapiens | 1e-24 | 117 |
|
ENST00000529383
|
UBTF-008 | protein_coding | Homo_sapiens | 0 | 466 |
|
ENST00000530828
|
UBTF-009 | protein_coding | Homo_sapiens | 0 | 767 |
|
ENST00000533177
|
UBTF-006 | protein_coding | Homo_sapiens | 0 | 440 |
|
ENST00000537550
|
UBTF-015 | processed_transcript | Homo_sapiens | 0 | 466 |
