C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SEC23A (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020986 Sec23a 10090 - 12:58958383-59012017 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021375 Sec23a-001 58958383-59012017 protein_coding
  ENSMUST00000134223 Sec23a-002 59006654-59012017 retained_intron
  ENSMUST00000154399 Sec23a-003 58966615-58971271 retained_intron
  ENSMUST00000165134 Sec23a-004 58959704-59007235 protein_coding
  ENSMUST00000169976 Sec23a-005 58972990-58982704 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021375ENSMUST00000134223ENSMUST00000165134
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021375 10.064±1.51 3.756±1.69 10.107±4.63 12.406±5.35 6.218±1.23 6.913±1.38 6.711±0.94 5.396±1.20 10.474±3.95 6.607±1.09 11.459±2.86 7.312±2.74 10.895±1.95 7.657±3.72
ENSMUST00000134223 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.308±0.00
ENSMUST00000165134 5.865±0.86 2.422±0.88 7.191±0.00 4.131±0.00 3.776±1.67 3.554±0.88 4.510±1.12 1.858±0.88 6.585±2.08 1.660±0.14 6.285±0.98 5.532±2.25 8.520±4.78 17.934±7.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VV CIL_0003VV_0002 CGP 12:58264720-59012017
CIL_0003VW CIL_0003VW_0002 CGP 12:58958383-59028470

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 IDA Golgi membrane
GO:0005515 IPI protein binding
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006886 TAS intracellular protein transport
GO:0006888 IEA ER to Golgi vesicle-mediated transport
GO:0008270 IEA zinc ion binding
GO:0030127 IEA COPII vesicle coat
GO:0030134 IDA ER to Golgi transport vesicle
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016636 sec23a Sec23 homolog A (S. cerevisiae) protein_coding Danio_rerio
ENSG00000100934 SEC23A Sec23 homolog A (S. cerevisiae) protein_coding Homo_sapiens

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