C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Sec23 homolog A (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100934 SEC23A 9606 - 14:39031919-39109646 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000307712 SEC23A-001 39031920-39103528 protein_coding
  ENST00000537403 SEC23A-002 39031919-39088723 protein_coding
  ENST00000545328 SEC23A-006 39032941-39103235 protein_coding
  ENST00000548032 SEC23A-011 39092761-39103212 protein_coding
  ENST00000553925 SEC23A-015 39064549-39067211 processed_transcript
  ENST00000553970 SEC23A-012 39094898-39103243 protein_coding
  ENST00000554615 SEC23A-004 39031919-39041433 retained_intron
  ENST00000555017 SEC23A-020 39091573-39103652 protein_coding
  ENST00000555363 SEC23A-016 39033204-39041244 retained_intron
  ENST00000555425 SEC23A-018 39093185-39109646 protein_coding
  ENST00000555682 SEC23A-021 39091370-39092594 processed_transcript
  ENST00000556092 SEC23A-010 39091658-39103233 protein_coding
  ENST00000557280 SEC23A-013 39094898-39103233 protein_coding
  ENST00000557437 SEC23A-009 39095999-39103829 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000307712ENST00000545328
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000307712 20.439±0.00 15.349±0.00 N/A 8.733±5.66 12.332±9.05 23.423±0.00 11.367±0.00 7.795±4.18 19.904±0.00 10.569±0.00 6.325±4.13 12.916±6.75 6.174±0.33 13.805±8.37
ENST00000545328 4.840±0.00 N/A 0.980±0.00 6.975±0.00 6.851±0.00 8.488±0.00 5.189±1.82 3.052±0.00 16.271±0.00 5.686±0.00 4.988±0.49 9.927±0.00 1.473±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VV CIL_0003VV_0001 CGP 14:38254103-39109646
CIL_0003VW CIL_0003VW_0001 CGP 14:39031919-39136973

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0005515 IPI protein binding
GO:0005783 TAS endoplasmic reticulum
GO:0005789 TAS endoplasmic reticulum membrane
GO:0005829 TAS cytosol
GO:0006886 IEA intracellular protein transport
GO:0006888 IEA:TAS ER to Golgi vesicle-mediated transport
GO:0008270 IEA zinc ion binding
GO:0012507 TAS ER to Golgi transport vesicle membrane
GO:0016192 TAS vesicle-mediated transport
GO:0018279 TAS protein N-linked glycosylation via asparagine
GO:0019886 TAS antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0030127 IEA COPII vesicle coat
GO:0030134 IEA ER to Golgi transport vesicle
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0048208 TAS COPII vesicle coating
GO:0048471 IEA perinuclear region of cytoplasm
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016636 sec23a Sec23 homolog A (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000020986 Sec23a SEC23A (S. cerevisiae) protein_coding Mus_musculus

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