C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC23A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021375 Sec23a-001 ENSMUSG00000020986 10090 - 12:58958383-59012017 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021375
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021375 10.064±1.51 3.756±1.69 10.107±4.63 12.406±5.35 6.218±1.23 6.913±1.38 6.711±0.94 5.396±1.20 10.474±3.95 6.607±1.09 11.459±2.86 7.312±2.74 10.895±1.95 7.657±3.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VV CIL_0003VV_0002 CGP 12:58264720-59012017
CIL_0003VW CIL_0003VW_0002 CGP 12:58958383-59028470

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IDA Golgi membrane
GO:0005515 IPI protein binding
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006886 TAS intracellular protein transport
GO:0006888 IEA ER to Golgi vesicle-mediated transport
GO:0008270 IEA zinc ion binding
GO:0030127 IEA COPII vesicle coat
GO:0030134 IDA ER to Golgi transport vesicle
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307712 SEC23A-001 protein_coding Homo_sapiens 0 3258
ENST00000537403 SEC23A-002 protein_coding Homo_sapiens 0 2410
ENST00000545328 SEC23A-006 protein_coding Homo_sapiens 0 2712
ENST00000548032 SEC23A-011 protein_coding Homo_sapiens 0 411
ENST00000553925 SEC23A-015 processed_transcript Homo_sapiens 6.00036e-42 174
ENST00000553970 SEC23A-012 protein_coding Homo_sapiens 0 316
ENST00000554615 SEC23A-004 retained_intron Homo_sapiens 0 337
ENST00000555017 SEC23A-020 protein_coding Homo_sapiens 0 706
ENST00000555363 SEC23A-016 retained_intron Homo_sapiens 0 442
ENST00000555425 SEC23A-018 protein_coding Homo_sapiens 0 407
ENST00000555682 SEC23A-021 processed_transcript Homo_sapiens 0 401
ENST00000556092 SEC23A-010 protein_coding Homo_sapiens 0 614
ENST00000557280 SEC23A-013 protein_coding Homo_sapiens 0 315

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