C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC23A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165134 Sec23a-004 ENSMUSG00000020986 10090 - 12:58959704-59007235 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000165134
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000165134 5.865±0.86 2.422±0.88 7.191±0.00 4.131±0.00 3.776±1.67 3.554±0.88 4.510±1.12 1.858±0.88 6.585±2.08 1.660±0.14 6.285±0.98 5.532±2.25 8.520±4.78 17.934±7.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VV CIL_0003VV_0002 CGP 12:58264720-59012017
CIL_0003VW CIL_0003VW_0002 CGP 12:58958383-59028470

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IDA Golgi membrane
GO:0005515 IPI protein binding
GO:0006886 TAS intracellular protein transport
GO:0006888 IEA ER to Golgi vesicle-mediated transport
GO:0008270 IEA zinc ion binding
GO:0030127 IEA COPII vesicle coat
GO:0030134 IDA ER to Golgi transport vesicle
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307712 SEC23A-001 protein_coding Homo_sapiens 0 2712
ENST00000537403 SEC23A-002 protein_coding Homo_sapiens 0 2388
ENST00000545328 SEC23A-006 protein_coding Homo_sapiens 0 3120
ENST00000548032 SEC23A-011 protein_coding Homo_sapiens 0 411
ENST00000553925 SEC23A-015 processed_transcript Homo_sapiens 6.00036e-42 174
ENST00000553970 SEC23A-012 protein_coding Homo_sapiens 0 316
ENST00000554615 SEC23A-004 retained_intron Homo_sapiens 0 315
ENST00000555017 SEC23A-020 protein_coding Homo_sapiens 0 407
ENST00000555363 SEC23A-016 retained_intron Homo_sapiens 0 442
ENST00000555425 SEC23A-018 protein_coding Homo_sapiens 0 407
ENST00000555682 SEC23A-021 processed_transcript Homo_sapiens 0 326
ENST00000556092 SEC23A-010 protein_coding Homo_sapiens 0 411
ENST00000557280 SEC23A-013 protein_coding Homo_sapiens 0 315

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