C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003VV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000176435-ENSG00000100934 CGP 9606 14:38254103-39109646
GeneTranscriptPositionBiotype
ENSG00000100934 (SEC23A)
Sec23 homolog A (S. cerevisiae) 		ENST00000307712 (SEC23A-001) 39031920-39103528 protein_coding
ENST00000537403 (SEC23A-002) 39031919-39088723 protein_coding
ENST00000545328 (SEC23A-006) 39032941-39103235 protein_coding
ENST00000548032 (SEC23A-011) 39092761-39103212 protein_coding
ENST00000553925 (SEC23A-015) 39064549-39067211 processed_transcript
ENST00000553970 (SEC23A-012) 39094898-39103243 protein_coding
ENST00000554615 (SEC23A-004) 39031919-39041433 retained_intron
ENST00000555017 (SEC23A-020) 39091573-39103652 protein_coding
ENST00000555363 (SEC23A-016) 39033204-39041244 retained_intron
ENST00000555425 (SEC23A-018) 39093185-39109646 protein_coding
ENST00000555682 (SEC23A-021) 39091370-39092594 processed_transcript
ENST00000556092 (SEC23A-010) 39091658-39103233 protein_coding
ENST00000557280 (SEC23A-013) 39094898-39103233 protein_coding
ENST00000557437 (SEC23A-009) 39095999-39103829 protein_coding
ENSG00000176435 (CLEC14A)
C-type lectin domain family 14, member A 		ENST00000342213 (CLEC14A-001) 38254103-38256369 protein_coding
ENSG00000199285 (Y_RNA)
Y RNA 		ENST00000362415 (Y_RNA.1-214) 38987281-38987383 misc_RNA
ENSG00000258591 (RP11-545M17.3)
 ENST00000556877 (RP11-545M17.3-001) 39108342-39108707 processed_pseudogene
ENSG00000258680 (RP11-506K19.1)
 ENST00000554098 (RP11-506K19.1-001) 38835389-38835788 processed_pseudogene
ENSG00000258948 (KRT8P1)
keratin 8 pseudogene 1 		ENST00000557533 (KRT8P1-001) 38727275-38728481 processed_pseudogene
ENSG00000259070 (LINC00639)
long intergenic non-protein coding RNA 639 		ENST00000553932 (LINC00639-001) 38749339-38948273 lincRNA
ENST00000554732 (LINC00639-002) 38749343-38948239 lincRNA
ENST00000556116 (LINC00639-005) 38838889-38948237 lincRNA
ENST00000557019 (LINC00639-004) 38838846-38948206 lincRNA
ENST00000557440 (LINC00639-003) 38749358-38838458 lincRNA
ENSG00000259072 (RP11-96D24.1)
 ENST00000555636 (RP11-96D24.1-001) 38290953-38311930 lincRNA
ENSG00000259121 (RP11-545M17.2)
 ENST00000554037 (RP11-545M17.2-001) 39090901-39091101 processed_pseudogene
ENSG00000270713 (RP11-506K19.2)
 ENST00000603120 (RP11-506K19.2-001) 38973399-38974085 processed_pseudogene
ENSG00000271468 (RP11-14N4.1)
 ENST00000603845 (RP11-14N4.1-001) 38605255-38606098 processed_pseudogene
CIL_0003VV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000045930-ENSMUSG00000020986 CGP 10090 12:58264720-59012017
GeneTranscriptPositionBiotype
ENSMUSG00000020986 (Sec23a)
SEC23A (S. cerevisiae) 		ENSMUST00000021375 (Sec23a-001) 58958383-59012017 protein_coding
ENSMUST00000134223 (Sec23a-002) 59006654-59012017 retained_intron
ENSMUST00000154399 (Sec23a-003) 58966615-58971271 retained_intron
ENSMUST00000165134 (Sec23a-004) 58959704-59007235 protein_coding
ENSMUST00000169976 (Sec23a-005) 58972990-58982704 retained_intron
ENSMUSG00000045930 (Clec14a)
C-type lectin domain family 14, member a 		ENSMUST00000062254 (Clec14a-201) 58264720-58269258 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003VV_0001ENSG00000100934ENST00000307712ENST00000537403ENST00000545328ENST00000548032ENST00000553925ENST00000553970ENST00000554615ENST00000555017ENST00000555363ENST00000555425ENST00000555682ENST00000556092ENST00000557280ENST00000557437ENSG00000176435ENST00000342213ENSG00000199285ENST00000362415ENSG00000258591ENST00000556877ENSG00000258680ENST00000554098ENSG00000258948ENST00000557533ENSG00000259070ENST00000553932ENST00000554732ENST00000556116ENST00000557019ENST00000557440ENSG00000259072ENST00000555636ENSG00000259121ENST00000554037ENSG00000270713ENST00000603120ENSG00000271468ENST00000603845CIL_0003VV_0002ENSMUSG00000020986ENSMUST00000021375ENSMUST00000134223ENSMUST00000154399ENSMUST00000165134ENSMUST00000169976ENSMUSG00000045930ENSMUST00000062254
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003VV_0001ENSG00000100934ENST00000307712ENST00000545328ENSG00000176435ENST00000342213ENSG00000199285ENST00000362415ENSG00000258591ENST00000556877ENSG00000258680ENST00000554098ENSG00000258948ENST00000557533ENSG00000259070ENST00000553932ENST00000554732ENST00000556116ENST00000557019ENST00000557440ENSG00000259072ENST00000555636ENSG00000259121ENST00000554037ENSG00000270713ENST00000603120ENSG00000271468ENST00000603845CIL_0003VV_0002ENSMUSG00000020986ENSMUST00000021375ENSMUST00000134223ENSMUST00000165134ENSMUSG00000045930ENSMUST00000062254
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100934 ENST00000307712 20.439±0.00 15.349±0.00 N/A 8.733±5.66 12.332±9.05 23.423±0.00 11.367±0.00 7.795±4.18 19.904±0.00 10.569±0.00 6.325±4.13 12.916±6.75 6.174±0.33 13.805±8.37
ENST00000537403 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545328 4.840±0.00 N/A 0.980±0.00 6.975±0.00 6.851±0.00 8.488±0.00 5.189±1.82 3.052±0.00 16.271±0.00 5.686±0.00 4.988±0.49 9.927±0.00 1.473±0.00 N/A
ENST00000548032 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553970 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554615 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555017 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555363 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555425 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557437 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000176435 ENST00000342213 45.140±0.00 28.186±0.00 1.630±0.00 1.889±0.44 14.832±10.30 9.973±8.17 12.302±7.27 6.686±4.54 3.940±0.64 17.298±8.49 6.824±3.33 8.042±4.17 16.289±10.31 7.065±4.86
ENSG00000199285 ENST00000362415 N/A N/A N/A 0.336±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000258591 ENST00000556877 N/A 0.162±0.00 N/A 1.192±0.76 N/A N/A N/A 0.476±0.40 N/A 0.905±0.00 N/A 0.114±0.00 0.180±0.00 0.206±0.13
ENSG00000258680 ENST00000554098 N/A N/A N/A N/A N/A N/A N/A N/A 0.329±0.00 N/A N/A 0.154±0.00 0.146±0.00 N/A
ENSG00000258948 ENST00000557533 N/A N/A N/A 0.111±0.09 N/A 0.016±0.00 N/A 0.036±0.00 N/A 0.020±0.00 N/A N/A N/A N/A
ENSG00000259070 ENST00000553932 0.178±0.00 0.078±0.00 N/A 0.237±0.00 0.207±0.00 0.048±0.00 0.096±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000554732 0.219±0.00 N/A N/A N/A 0.074±0.00 N/A 0.337±0.00 0.031±0.00 N/A N/A N/A 0.055±0.00 N/A 0.086±0.04
ENST00000556116 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.117±0.00 0.205±0.00 N/A
ENST00000557019 N/A N/A N/A N/A N/A 0.252±0.00 N/A N/A 0.027±0.00 N/A N/A N/A N/A N/A
ENST00000557440 N/A 0.132±0.00 N/A N/A N/A 0.072±0.00 N/A N/A N/A 0.151±0.00 N/A 0.075±0.02 0.098±0.01 N/A
ENSG00000259072 ENST00000555636 N/A 0.061±0.00 N/A 0.038±0.00 N/A N/A 0.016±0.00 N/A N/A 0.552±0.00 N/A N/A N/A 0.126±0.00
ENSG00000259121 ENST00000554037 0.297±0.00 0.217±0.00 N/A 0.341±0.00 0.226±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000270713 ENST00000603120 N/A N/A N/A N/A N/A N/A 0.082±0.04 N/A 0.076±0.00 N/A N/A N/A N/A N/A
ENSG00000271468 ENST00000603845 N/A N/A N/A N/A N/A N/A 0.090±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020986 ENSMUST00000021375 10.064±1.51 3.756±1.69 10.107±4.63 12.406±5.35 6.218±1.23 6.913±1.38 6.711±0.94 5.396±1.20 10.474±3.95 6.607±1.09 11.459±2.86 7.312±2.74 10.895±1.95 7.657±3.72
ENSMUST00000134223 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.308±0.00
ENSMUST00000154399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165134 5.865±0.86 2.422±0.88 7.191±0.00 4.131±0.00 3.776±1.67 3.554±0.88 4.510±1.12 1.858±0.88 6.585±2.08 1.660±0.14 6.285±0.98 5.532±2.25 8.520±4.78 17.934±7.75
ENSMUST00000169976 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000045930 ENSMUST00000062254 6.753±0.87 3.731±0.67 4.069±0.14 1.135±0.63 5.113±1.43 6.310±0.39 3.431±0.80 6.232±0.44 2.840±1.17 106.465±0.38 0.915±0.08 11.061±3.67 4.613±3.71 0.158±0.06

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