C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif-containing 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110520 Trim9-201 ENSMUSG00000021071 10090 - 12:70244539-70347614 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000110520
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000110520 0.030±0.02 0.177±0.12 0.015±0.01 10.019±2.67 0.297±0.10 0.190±0.08 0.016±0.00 0.043±0.01 0.014±0.01 0.037±0.02 0.012±0.00 0.604±0.33 0.020±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003CU CIL_0003CU_0002 CGP 12:70190811-70347614
CIL_00069N CIL_00069N_0003 CGP 12:70244539-70468040

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005737 ISS cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0030054 IEA cell junction
GO:0030425 IDA dendrite
GO:0031410 IEA cytoplasmic vesicle
GO:0043161 ISS proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045202 IEA synapse

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000298355 TRIM9-001 protein_coding Homo_sapiens 0 2272
ENST00000338969 TRIM9-002 protein_coding Homo_sapiens 0 2200
ENST00000360392 TRIM9-003 protein_coding Homo_sapiens 0 2237
ENST00000555170 TRIM9-007 retained_intron Homo_sapiens 0 324
ENST00000555933 TRIM9-006 retained_intron Homo_sapiens 2e-22 110
ENST00000557456 TRIM9-005 processed_transcript Homo_sapiens 2e-22 110

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