C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif-containing 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110522 Trim9-202 ENSMUSG00000021071 10090 - 12:70244539-70347614 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonTestisENSMUST00000110522
Transcript ID Adipose Adrenal Brain Breast Colon Testis
ENSMUST00000110522 0.006±0.00 0.134±0.06 4.707±2.25 0.097±0.00 0.252±0.06 0.228±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003CU CIL_0003CU_0002 CGP 12:70190811-70347614
CIL_00069N CIL_00069N_0003 CGP 12:70244539-70468040

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000149 IEA SNARE binding
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005737 IDA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008021 IEA synaptic vesicle
GO:0008270 IEA zinc ion binding
GO:0016079 IEA synaptic vesicle exocytosis
GO:0030425 IEA dendrite
GO:0035544 IEA negative regulation of SNARE complex assembly
GO:0042803 IEA protein homodimerization activity
GO:0043161 IEA proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045955 IEA negative regulation of calcium ion-dependent exocytosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000298355 TRIM9-001 protein_coding Homo_sapiens 0 2272
ENST00000338969 TRIM9-002 protein_coding Homo_sapiens 0 2200
ENST00000360392 TRIM9-003 protein_coding Homo_sapiens 0 2235
ENST00000555170 TRIM9-007 retained_intron Homo_sapiens 0 324
ENST00000555933 TRIM9-006 retained_intron Homo_sapiens 0 412
ENST00000557456 TRIM9-005 processed_transcript Homo_sapiens 0 412

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