C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 4930447C04 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021098 4930447C04Rik 10090 - 12:72881109-72940774 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000044000 4930447C04Rik-001 72881109-72917906 protein_coding
  ENSMUST00000110489 4930447C04Rik-201 72881109-72917760 protein_coding
  ENSMUST00000130635 4930447C04Rik-005 72913187-72937977 protein_coding
  ENSMUST00000131033 4930447C04Rik-002 72906234-72917857 nonsense_mediated_decay
  ENSMUST00000132016 4930447C04Rik-007 72892924-72906271 processed_transcript
  ENSMUST00000132067 4930447C04Rik-003 72913191-72940083 protein_coding
  ENSMUST00000132901 4930447C04Rik-008 72892870-72906473 retained_intron
  ENSMUST00000136075 4930447C04Rik-004 72911659-72940774 protein_coding
  ENSMUST00000143960 4930447C04Rik-006 72892816-72906277 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000044000ENSMUST00000110489ENSMUST00000131033ENSMUST00000132016ENSMUST00000132901ENSMUST00000136075ENSMUST00000143960
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000044000 N/A N/A N/A N/A N/A N/A 0.233±0.03 N/A N/A 0.036±0.00 0.805±0.00
ENSMUST00000110489 N/A N/A N/A 0.046±0.00 N/A N/A N/A 0.038±0.01 0.049±0.00 N/A N/A
ENSMUST00000131033 0.090±0.00 N/A 0.865±0.21 0.165±0.12 0.023±0.00 0.040±0.00 0.244±0.08 0.034±0.02 0.112±0.01 0.499±0.48 0.797±0.11
ENSMUST00000132016 N/A N/A N/A N/A N/A N/A N/A 0.196±0.00 N/A N/A N/A
ENSMUST00000132901 N/A 1.458±0.00 N/A N/A 0.065±0.00 N/A N/A 0.048±0.02 N/A N/A 2.535±0.00
ENSMUST00000136075 0.067±0.00 N/A 0.607±0.01 0.054±0.02 0.016±0.00 0.024±0.00 0.147±0.06 N/A 0.036±0.00 0.084±0.00 N/A
ENSMUST00000143960 N/A N/A 2.369±0.00 N/A 0.115±0.00 N/A N/A 0.102±0.04 0.239±0.01 0.620±0.40 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MW CIL_0008MW_0002 VISTA 12:72750612-73352572
CIL_0000S6 CIL_0000S6_0002 CGP 12:72761211-72940774
CIL_0000RZ CIL_0000RZ_0002 CGP 12:72881109-72944899

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0007275 IEA multicellular organismal development
GO:0051090 NAS regulation of sequence-specific DNA binding transcription factor activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000179008 C14orf39 chromosome 14 open reading frame 39 protein_coding Homo_sapiens

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