C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000S6_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100614-ENSG00000179008 CGP 9606 14:60245752-60515543
GeneTranscriptPositionBiotype
ENSG00000100614 (PPM1A)
protein phosphatase, Mg2+/Mn2+ dependent, 1A 		ENST00000325642 (PPM1A-009) 60245752-60292731 protein_coding
ENST00000325658 (PPM1A-002) 60249441-60288555 protein_coding
ENST00000395076 (PPM1A-001) 60249268-60299087 protein_coding
ENST00000525399 (PPM1A-006) 60250431-60283266 protein_coding
ENST00000528241 (PPM1A-008) 60249660-60283089 protein_coding
ENST00000531143 (PPM1A-005) 60245757-60292482 nonsense_mediated_decay
ENST00000531937 (PPM1A-007) 60256762-60283147 protein_coding
ENST00000532036 (PPM1A-004) 60245785-60293355 nonsense_mediated_decay
ENSG00000179008 (C14orf39)
chromosome 14 open reading frame 39 		ENST00000321731 (C14orf39-001) 60435956-60486096 protein_coding
ENST00000498565 (C14orf39-002) 60396469-60455050 nonsense_mediated_decay
ENST00000555476 (C14orf39-004) 60471632-60486044 protein_coding
ENST00000556799 (C14orf39-005) 60478357-60515543 protein_coding
ENST00000557138 (C14orf39-003) 60436623-60486019 nonsense_mediated_decay
ENSG00000184302 (SIX6)
SIX homeobox 6 		ENST00000327720 (SIX6-001) 60508951-60512850 protein_coding
ENSG00000254718 (CTD-2184C24.2)
 ENST00000529171 (CTD-2184C24.2-002) 60240127-60248765 antisense
ENST00000532515 (CTD-2184C24.2-001) 60240121-60245653 antisense
ENST00000553269 (CTD-2184C24.2-003) 60240132-60245336 antisense
ENST00000553775 (CTD-2184C24.2-004) 60240142-60245568 antisense
ENSG00000258427 (RBM8B)
RNA binding motif protein 8B pseudogene 		ENST00000555532 (RBM8B-001) 60397757-60398281 processed_pseudogene
ENSG00000258556 (CTD-2568P8.1)
 ENST00000554773 (CTD-2568P8.1-001) 60323236-60323907 lincRNA
ENSG00000258670 (RP11-1042B17.3)
 ENST00000557618 (RP11-1042B17.3-001) 60515119-60554916 antisense
ENSG00000258692 (SALL4P7)
spalt-like transcription factor 4 pseudogene 7 		ENST00000555779 (SALL4P7-001) 60493766-60496885 transcribed_processed_pseudogene
ENSG00000259169 (GNRHR2P1)
gonadotropin-releasing hormone (type 2) receptor 2 pseudogene 1 		ENST00000555315 (GNRHR2P1-001) 60398934-60400013 unprocessed_pseudogene
CIL_0000S6_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021096-ENSMUSG00000021098 CGP 10090 12:72761211-72940774
GeneTranscriptPositionBiotype
ENSMUSG00000021096 (Ppm1a)
protein phosphatase 1A, magnesium dependent, alpha isoform 		ENSMUST00000021514 (Ppm1a-201) 72761211-72794940 protein_coding
ENSMUSG00000021098 (4930447C04Rik)
RIKEN cDNA 4930447C04 gene 		ENSMUST00000044000 (4930447C04Rik-001) 72881109-72917906 protein_coding
ENSMUST00000110489 (4930447C04Rik-201) 72881109-72917760 protein_coding
ENSMUST00000130635 (4930447C04Rik-005) 72913187-72937977 protein_coding
ENSMUST00000131033 (4930447C04Rik-002) 72906234-72917857 nonsense_mediated_decay
ENSMUST00000132016 (4930447C04Rik-007) 72892924-72906271 processed_transcript
ENSMUST00000132067 (4930447C04Rik-003) 72913191-72940083 protein_coding
ENSMUST00000132901 (4930447C04Rik-008) 72892870-72906473 retained_intron
ENSMUST00000136075 (4930447C04Rik-004) 72911659-72940774 protein_coding
ENSMUST00000143960 (4930447C04Rik-006) 72892816-72906277 nonsense_mediated_decay
ENSMUSG00000021099 (Six6)
sine oculis-related homeobox 6 		ENSMUST00000021519 (Six6-001) 72939892-72944899 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000S6_0001ENSG00000100614ENST00000325642ENST00000325658ENST00000395076ENST00000525399ENST00000528241ENST00000531143ENST00000531937ENST00000532036ENSG00000179008ENST00000321731ENST00000498565ENST00000555476ENST00000556799ENST00000557138ENSG00000184302ENST00000327720ENSG00000254718ENST00000529171ENST00000532515ENST00000553269ENST00000553775ENSG00000258427ENST00000555532ENSG00000258556ENST00000554773ENSG00000258670ENST00000557618ENSG00000258692ENST00000555779ENSG00000259169ENST00000555315CIL_0000S6_0002ENSMUSG00000021096ENSMUST00000021514ENSMUSG00000021098ENSMUST00000044000ENSMUST00000110489ENSMUST00000130635ENSMUST00000131033ENSMUST00000132016ENSMUST00000132067ENSMUST00000132901ENSMUST00000136075ENSMUST00000143960ENSMUSG00000021099ENSMUST00000021519
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000S6_0001ENSG00000100614ENST00000325642ENST00000325658ENST00000395076ENST00000525399ENST00000531143ENST00000531937ENST00000532036ENSG00000179008ENST00000321731ENST00000555476ENST00000556799ENST00000557138ENSG00000184302ENST00000327720ENSG00000254718ENST00000529171ENST00000532515ENST00000553775ENSG00000258427ENST00000555532ENSG00000258556ENST00000554773ENSG00000258670ENST00000557618ENSG00000258692ENST00000555779ENSG00000259169ENST00000555315CIL_0000S6_0002ENSMUSG00000021096ENSMUST00000021514ENSMUSG00000021098ENSMUST00000044000ENSMUST00000110489ENSMUST00000131033ENSMUST00000132016ENSMUST00000132901ENSMUST00000136075ENSMUST00000143960ENSMUSG00000021099ENSMUST00000021519
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100614 ENST00000325642 8.040±0.00 5.227±0.00 N/A N/A 6.107±0.00 N/A 11.310±0.00 8.765±0.00 4.397±0.00 6.159±0.00 4.030±0.00 4.289±0.00 2.260±0.00 13.947±7.74
ENST00000325658 2.406±0.00 1.532±0.00 1.680±0.00 4.834±0.33 2.204±0.39 2.574±0.00 1.878±0.28 1.832±0.00 3.844±0.00 2.942±1.31 N/A 2.040±0.73 0.988±0.00 N/A
ENST00000395076 4.070±0.00 1.797±0.00 3.517±0.00 10.444±0.82 3.970±0.45 6.652±0.13 5.494±0.33 4.848±1.63 4.468±2.83 4.581±2.01 9.680±5.37 2.790±0.27 1.774±0.95 4.356±0.31
ENST00000525399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.514±0.00 6.189±0.00 26.565±0.00
ENST00000528241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531143 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.462±0.00
ENST00000531937 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 36.779±0.00
ENST00000532036 6.611±0.00 6.814±0.00 N/A N/A 6.631±0.00 12.077±0.00 10.293±0.00 11.670±0.00 6.527±0.00 8.832±0.00 N/A 4.895±0.00 3.603±0.09 18.561±0.00
ENSG00000179008 ENST00000321731 N/A 0.023±0.00 N/A N/A 0.041±0.02 0.012±0.00 N/A N/A N/A N/A N/A 0.051±0.04 N/A 2.551±0.32
ENST00000498565 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555476 0.078±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.197±0.00 0.019±0.00 N/A 7.635±0.00
ENST00000556799 N/A N/A N/A N/A N/A 0.193±0.00 N/A N/A N/A N/A N/A N/A 0.072±0.00 N/A
ENST00000557138 0.048±0.00 N/A N/A 0.006±0.00 N/A 0.090±0.00 N/A N/A N/A N/A 0.238±0.09 N/A N/A N/A
ENSG00000184302 ENST00000327720 0.006±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.372±0.00 N/A N/A 0.061±0.00
ENSG00000254718 ENST00000529171 N/A 0.270±0.00 N/A 0.169±0.00 0.343±0.00 0.061±0.00 N/A 0.256±0.00 0.028±0.00 N/A 0.133±0.00 N/A 0.113±0.00 4.353±0.00
ENST00000532515 0.017±0.00 N/A N/A N/A 0.058±0.00 N/A 0.008±0.00 N/A N/A N/A N/A 0.028±0.00 0.015±0.00 0.626±0.31
ENST00000553269 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553775 0.182±0.00 N/A N/A 0.177±0.00 N/A N/A 0.055±0.00 N/A N/A N/A N/A N/A N/A 11.747±2.64
ENSG00000258427 ENST00000555532 0.067±0.00 0.108±0.00 N/A N/A N/A N/A N/A 0.038±0.00 N/A 0.083±0.01 N/A N/A N/A N/A
ENSG00000258556 ENST00000554773 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.135±1.10
ENSG00000258670 ENST00000557618 0.340±0.00 0.815±0.00 N/A 0.687±0.00 0.478±0.00 0.228±0.00 0.160±0.06 0.425±0.00 0.071±0.00 0.479±0.00 0.012±0.00 0.097±0.06 N/A 0.295±0.16
ENSG00000258692 ENST00000555779 N/A N/A N/A 0.014±0.00 0.057±0.00 N/A 0.007±0.00 N/A N/A N/A N/A 0.093±0.00 N/A 0.044±0.01
ENSG00000259169 ENST00000555315 N/A N/A N/A N/A N/A 0.029±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021096 ENSMUST00000021514 23.524±3.51 28.437±9.32 34.041±1.06 22.961±3.87 20.577±5.74 21.229±0.66 15.761±7.02 16.750±3.83 19.247±2.00 16.477±1.59 30.146±13.07 15.843±5.82 19.698±4.83 56.192±11.05
ENSMUSG00000021098 ENSMUST00000044000 N/A N/A N/A N/A N/A N/A N/A N/A 0.233±0.03 N/A N/A N/A 0.036±0.00 0.805±0.00
ENSMUST00000110489 N/A N/A N/A N/A 0.046±0.00 N/A N/A N/A N/A N/A 0.038±0.01 0.049±0.00 N/A N/A
ENSMUST00000130635 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131033 0.090±0.00 N/A N/A 0.865±0.21 0.165±0.12 N/A 0.023±0.00 0.040±0.00 0.244±0.08 N/A 0.034±0.02 0.112±0.01 0.499±0.48 0.797±0.11
ENSMUST00000132016 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.196±0.00 N/A N/A N/A
ENSMUST00000132067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132901 N/A 1.458±0.00 N/A N/A N/A N/A 0.065±0.00 N/A N/A N/A 0.048±0.02 N/A N/A 2.535±0.00
ENSMUST00000136075 0.067±0.00 N/A N/A 0.607±0.01 0.054±0.02 N/A 0.016±0.00 0.024±0.00 0.147±0.06 N/A N/A 0.036±0.00 0.084±0.00 N/A
ENSMUST00000143960 N/A N/A N/A 2.369±0.00 N/A N/A 0.115±0.00 N/A N/A N/A 0.102±0.04 0.239±0.01 0.620±0.40 N/A
ENSMUSG00000021099 ENSMUST00000021519 N/A N/A N/A 0.384±0.10 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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