C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021243 Fcf1 10090 + 12:84970897-84983303 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021669 Fcf1-001 84970897-84983303 protein_coding
  ENSMUST00000171040 Fcf1-002 84970981-84983291 protein_coding
  ENSMUST00000172241 Fcf1-003 84980210-84983297 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000021669ENSMUST00000171040
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000021669 27.899±2.02 45.743±1.31 34.461±2.19 54.572±0.00 17.146±0.00 24.079±1.66 69.187±25.76 12.542±0.83 31.538±17.54 40.179±21.10 28.305±12.48
ENSMUST00000171040 30.850±0.00 N/A N/A N/A N/A 24.247±0.00 N/A N/A 33.307±4.06 45.443±11.38 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AZ CIL_0005AZ_0002 CGP 12:84918148-84983303
CIL_0005AX CIL_0005AX_0002 CGP 12:84970897-85070515

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006364 IEA rRNA processing
GO:0008150 ND biological_process
GO:0032040 IEA small-subunit processome
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041373 FCF1 FCF1 rRNA-processing protein protein_coding Danio_rerio
ENSG00000119616 FCF1 FCF1 rRNA-processing protein protein_coding Homo_sapiens

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