C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171040 Fcf1-002 ENSMUSG00000021243 10090 + 12:84970981-84983291 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeKidneyOvaryPlacentaENSMUST00000171040
Transcript ID Adipose Kidney Ovary Placenta
ENSMUST00000171040 30.850±0.00 24.247±0.00 33.307±4.06 45.443±11.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AZ CIL_0005AZ_0002 CGP 12:84918148-84983303
CIL_0005AX CIL_0005AX_0002 CGP 12:84970897-85070515

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0032040 IEA small-subunit processome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341162 FCF1-001 protein_coding Homo_sapiens 0 771
ENST00000432690 FCF1P1-001 processed_pseudogene Homo_sapiens 0 490
ENST00000448326 FCF1P4-001 processed_pseudogene Homo_sapiens 4e-25 117
ENST00000451185 FCF1P7-001 processed_pseudogene Homo_sapiens 0 486
ENST00000456841 FCF1P6-001 processed_pseudogene Homo_sapiens 0 603
ENST00000496394 FCF1P3-001 processed_pseudogene Homo_sapiens 0 486
ENST00000510322 FCF1P8-001 processed_pseudogene Homo_sapiens 0 617
ENST00000534938 FCF1-007 protein_coding Homo_sapiens 0 771
ENST00000553615 FCF1-003 protein_coding Homo_sapiens 0 688
ENST00000553673 FCF1-009 nonsense_mediated_decay Homo_sapiens 0 313
ENST00000554064 FCF1-008 nonsense_mediated_decay Homo_sapiens 0 394
ENST00000554590 FCF1-002 protein_coding Homo_sapiens 0 479
ENST00000554973 FCF1-010 retained_intron Homo_sapiens 0 364
ENST00000556814 FCF1-006 nonsense_mediated_decay Homo_sapiens 0 525
ENST00000604318 RP11-365F18.6-001 processed_pseudogene Homo_sapiens 0 595

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