C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021669 Fcf1-001 ENSMUSG00000021243 10090 + 12:84970897-84983303 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000021669
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000021669 27.899±2.02 45.743±1.31 34.461±2.19 54.572±0.00 17.146±0.00 24.079±1.66 69.187±25.76 12.542±0.83 31.538±17.54 40.179±21.10 28.305±12.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AZ CIL_0005AZ_0002 CGP 12:84918148-84983303
CIL_0005AX CIL_0005AX_0002 CGP 12:84970897-85070515

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006364 IEA rRNA processing
GO:0008150 ND biological_process
GO:0032040 IEA small-subunit processome
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341162 FCF1-001 protein_coding Homo_sapiens 0 806
ENST00000432690 FCF1P1-001 processed_pseudogene Homo_sapiens 0 490
ENST00000448326 FCF1P4-001 processed_pseudogene Homo_sapiens 4e-25 117
ENST00000451185 FCF1P7-001 processed_pseudogene Homo_sapiens 0 488
ENST00000456841 FCF1P6-001 processed_pseudogene Homo_sapiens 0 604
ENST00000496394 FCF1P3-001 processed_pseudogene Homo_sapiens 0 490
ENST00000510322 FCF1P8-001 processed_pseudogene Homo_sapiens 0 621
ENST00000534938 FCF1-007 protein_coding Homo_sapiens 0 771
ENST00000553615 FCF1-003 protein_coding Homo_sapiens 0 688
ENST00000553673 FCF1-009 nonsense_mediated_decay Homo_sapiens 0 313
ENST00000554064 FCF1-008 nonsense_mediated_decay Homo_sapiens 0 394
ENST00000554590 FCF1-002 protein_coding Homo_sapiens 0 479
ENST00000554973 FCF1-010 retained_intron Homo_sapiens 0 364
ENST00000556814 FCF1-006 nonsense_mediated_decay Homo_sapiens 0 525
ENST00000604318 RP11-365F18.6-001 processed_pseudogene Homo_sapiens 0 595

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