C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005AZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000119682-ENSG00000119616 CGP 9606 14:74653437-74738620
GeneTranscriptPositionBiotype
ENSG00000119616 (FCF1)
FCF1 rRNA-processing protein 		ENST00000341162 (FCF1-001) 74713144-74738620 protein_coding
ENST00000534938 (FCF1-007) 74713170-74735040 protein_coding
ENST00000553615 (FCF1-003) 74713170-74735304 protein_coding
ENST00000553673 (FCF1-009) 74713204-74723343 nonsense_mediated_decay
ENST00000554064 (FCF1-008) 74713170-74732812 nonsense_mediated_decay
ENST00000554590 (FCF1-002) 74713144-74732817 protein_coding
ENST00000554973 (FCF1-010) 74715672-74732793 retained_intron
ENST00000556814 (FCF1-006) 74713168-74734917 nonsense_mediated_decay
ENSG00000119682 (AREL1)
apoptosis resistant E3 ubiquitin protein ligase 1 		ENST00000356357 (AREL1-001) 74661252-74713115 protein_coding
ENST00000469797 (AREL1-003) 74670642-74713067 retained_intron
ENST00000473934 (AREL1-004) 74691059-74713087 processed_transcript
ENST00000481010 (AREL1-018) 74669687-74675708 nonsense_mediated_decay
ENST00000490805 (AREL1-017) 74673184-74676215 protein_coding
ENST00000553279 (AREL1-021) 74675866-74685646 nonsense_mediated_decay
ENST00000553411 (AREL1-016) 74675788-74683395 nonsense_mediated_decay
ENST00000554070 (AREL1-020) 74653437-74664065 nonsense_mediated_decay
ENST00000554525 (AREL1-015) 74692016-74712943 processed_transcript
ENST00000555249 (AREL1-014) 74683389-74713080 protein_coding
ENST00000555330 (AREL1-012) 74661272-74685660 nonsense_mediated_decay
ENST00000556202 (AREL1-007) 74663814-74713087 protein_coding
ENST00000556327 (AREL1-005) 74670071-74676024 retained_intron
ENST00000556589 (AREL1-011) 74683296-74713098 processed_transcript
ENST00000556860 (AREL1-013) 74692102-74713087 processed_transcript
ENST00000557401 (AREL1-009) 74660221-74713108 processed_transcript
ENST00000557688 (AREL1-019) 74663671-74664954 retained_intron
ENSG00000222604 (SNORA7)
Small nucleolar RNA SNORA7 		ENST00000410672 (SNORA7.1-205) 74711936-74712045 snoRNA
ENSG00000258439 (RP11-173A8.2)
 ENST00000555623 (RP11-173A8.2-001) 74658049-74658590 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0005AZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000042350-ENSMUSG00000021243 CGP 10090 12:84918148-84983303
GeneTranscriptPositionBiotype
ENSMUSG00000021243 (Fcf1)
FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) 		ENSMUST00000021669 (Fcf1-001) 84970897-84983303 protein_coding
ENSMUST00000171040 (Fcf1-002) 84970981-84983291 protein_coding
ENSMUST00000172241 (Fcf1-003) 84980210-84983297 retained_intron
ENSMUSG00000042350 (Arel1)
apoptosis resistant E3 ubiquitin protein ligase 1 		ENSMUST00000043169 (Arel1-001) 84918150-84970900 protein_coding
ENSMUST00000163231 (Arel1-002) 84918148-84970824 nonsense_mediated_decay
ENSMUST00000163372 (Arel1-007) 84934319-84943378 nonsense_mediated_decay
ENSMUST00000165093 (Arel1-004) 84941761-84945398 protein_coding
ENSMUST00000165886 (Arel1-006) 84941791-84970838 protein_coding
ENSMUST00000167448 (Arel1-003) 84941782-84970856 protein_coding
ENSMUST00000168713 (Arel1-005) 84951082-84966030 processed_transcript
ENSMUST00000169161 (Arel1-008) 84940161-84946923 protein_coding
ENSMUSG00000079645 (Gm17193)
predicted gene 17193 		ENSMUST00000116345 (Gm17193-001) 84922542-84923512 sense_intronic

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005AZ_0001ENSG00000119616ENST00000341162ENST00000534938ENST00000553615ENST00000553673ENST00000554064ENST00000554590ENST00000554973ENST00000556814ENSG00000119682ENST00000356357ENST00000469797ENST00000473934ENST00000481010ENST00000490805ENST00000553279ENST00000553411ENST00000554070ENST00000554525ENST00000555249ENST00000555330ENST00000556202ENST00000556327ENST00000556589ENST00000556860ENST00000557401ENST00000557688ENSG00000222604ENST00000410672ENSG00000258439ENST00000555623CIL_0005AZ_0002ENSMUSG00000021243ENSMUST00000021669ENSMUST00000171040ENSMUST00000172241ENSMUSG00000042350ENSMUST00000043169ENSMUST00000163231ENSMUST00000163372ENSMUST00000165093ENSMUST00000165886ENSMUST00000167448ENSMUST00000168713ENSMUST00000169161ENSMUSG00000079645ENSMUST00000116345
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005AZ_0001ENSG00000119616ENST00000341162ENST00000534938ENST00000553615ENST00000554973ENST00000556814ENSG00000119682ENST00000356357ENST00000469797ENST00000481010ENST00000555330ENST00000556202ENST00000556327ENSG00000222604ENST00000410672ENSG00000258439ENST00000555623CIL_0005AZ_0002ENSMUSG00000021243ENSMUST00000021669ENSMUST00000171040ENSMUSG00000042350ENSMUST00000043169ENSMUST00000163231ENSMUSG00000079645ENSMUST00000116345
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000119616 ENST00000341162 N/A N/A 0.120±0.00 0.254±0.00 1.163±0.00 4.093±0.00 1.603±1.29 3.013±0.00 1.739±0.00 N/A 0.870±0.76 2.960±1.60 2.710±0.71 1.626±1.16
ENST00000534938 N/A N/A 1.141±0.00 1.018±0.00 2.228±0.00 2.415±0.00 3.162±0.00 N/A 2.331±0.00 3.920±0.00 N/A 4.938±2.35 N/A 1.616±0.00
ENST00000553615 8.021±0.00 5.307±0.00 0.775±0.00 5.797±0.00 10.314±0.00 8.094±0.00 1.390±0.57 3.240±2.38 2.738±0.00 3.909±0.00 2.807±0.00 5.090±2.73 4.679±1.17 5.484±3.15
ENST00000553673 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554590 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554973 N/A N/A 1.217±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556814 N/A N/A 0.645±0.00 1.766±0.00 3.254±0.00 1.577±0.00 N/A 1.934±0.00 1.754±0.00 N/A 2.420±0.00 3.600±1.52 7.206±0.00 2.094±0.00
ENSG00000119682 ENST00000356357 2.328±0.00 1.432±0.00 2.355±0.00 3.422±1.01 1.305±0.06 0.697±0.00 2.059±0.88 2.027±0.00 1.410±0.20 1.813±0.33 1.526±0.00 1.962±1.64 1.863±0.77 3.263±1.00
ENST00000469797 N/A N/A N/A N/A 1.394±0.00 2.041±0.00 N/A N/A N/A N/A N/A 1.605±0.00 N/A N/A
ENST00000473934 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481010 N/A N/A N/A N/A N/A N/A N/A 2.901±0.00 N/A N/A N/A N/A N/A N/A
ENST00000490805 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553411 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555330 1.104±0.00 N/A N/A 0.955±0.29 0.670±0.00 3.033±0.00 1.279±0.00 2.695±0.91 1.139±0.00 1.308±0.19 1.705±0.00 1.059±0.00 2.422±0.00 3.948±0.37
ENST00000556202 N/A N/A N/A N/A 1.045±0.00 N/A N/A N/A N/A N/A 0.533±0.00 0.722±0.00 N/A N/A
ENST00000556327 N/A N/A N/A N/A N/A N/A 2.045±0.00 N/A N/A N/A 2.577±0.00 N/A N/A N/A
ENST00000556589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557401 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557688 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000222604 ENST00000410672 N/A 0.396±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000258439 ENST00000555623 N/A 0.137±0.00 0.333±0.00 0.058±0.00 0.083±0.00 N/A 0.084±0.00 0.269±0.00 0.603±0.53 0.089±0.00 N/A 0.201±0.12 0.078±0.00 0.167±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021243 ENSMUST00000021669 27.899±2.02 N/A 45.743±1.31 34.461±2.19 54.572±0.00 N/A 17.146±0.00 24.079±1.66 69.187±25.76 N/A 12.542±0.83 31.538±17.54 40.179±21.10 28.305±12.48
ENSMUST00000171040 30.850±0.00 N/A N/A N/A N/A N/A N/A 24.247±0.00 N/A N/A N/A 33.307±4.06 45.443±11.38 N/A
ENSMUST00000172241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000042350 ENSMUST00000043169 9.528±3.50 11.458±5.29 9.450±1.37 14.088±6.97 7.686±2.14 11.722±2.89 8.735±2.81 6.279±0.69 10.626±3.71 12.339±4.61 6.291±0.71 5.730±2.87 4.985±2.01 11.893±4.43
ENSMUST00000163231 N/A N/A N/A N/A 3.519±0.00 N/A N/A N/A N/A N/A N/A 9.848±0.00 N/A N/A
ENSMUST00000163372 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165093 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165886 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167448 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168713 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000079645 ENSMUST00000116345 0.509±0.20 0.453±0.03 0.815±0.15 1.410±0.16 0.363±0.09 0.269±0.00 0.353±0.13 0.221±0.09 0.888±0.39 N/A 0.094±0.03 1.022±0.47 0.579±0.18 0.408±0.19

Loading