C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: FCF1 rRNA-processing protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000119616 FCF1 9606 + 14:74713144-74738620 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000341162 FCF1-001 74713144-74738620 protein_coding
  ENST00000534938 FCF1-007 74713170-74735040 protein_coding
  ENST00000553615 FCF1-003 74713170-74735304 protein_coding
  ENST00000553673 FCF1-009 74713204-74723343 nonsense_mediated_decay
  ENST00000554064 FCF1-008 74713170-74732812 nonsense_mediated_decay
  ENST00000554590 FCF1-002 74713144-74732817 protein_coding
  ENST00000554973 FCF1-010 74715672-74732793 retained_intron
  ENST00000556814 FCF1-006 74713168-74734917 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000341162ENST00000534938ENST00000553615ENST00000554973ENST00000556814
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000341162 N/A N/A 0.120±0.00 0.254±0.00 1.163±0.00 4.093±0.00 1.603±1.29 3.013±0.00 1.739±0.00 N/A 0.870±0.76 2.960±1.60 2.710±0.71 1.626±1.16
ENST00000534938 N/A N/A 1.141±0.00 1.018±0.00 2.228±0.00 2.415±0.00 3.162±0.00 N/A 2.331±0.00 3.920±0.00 N/A 4.938±2.35 N/A 1.616±0.00
ENST00000553615 8.021±0.00 5.307±0.00 0.775±0.00 5.797±0.00 10.314±0.00 8.094±0.00 1.390±0.57 3.240±2.38 2.738±0.00 3.909±0.00 2.807±0.00 5.090±2.73 4.679±1.17 5.484±3.15
ENST00000554973 N/A N/A 1.217±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556814 N/A N/A 0.645±0.00 1.766±0.00 3.254±0.00 1.577±0.00 N/A 1.934±0.00 1.754±0.00 N/A 2.420±0.00 3.600±1.52 7.206±0.00 2.094±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AZ CIL_0005AZ_0001 CGP 14:74653437-74738620
CIL_0005AX CIL_0005AX_0001 CGP 14:74713144-74859435

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006364 IEA rRNA processing
GO:0032040 IEA small-subunit processome
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041373 FCF1 FCF1 rRNA-processing protein protein_coding Danio_rerio
ENSMUSG00000021243 Fcf1 FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) protein_coding Mus_musculus

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