C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein 48 (U11/U12)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000178564 Snrnp48-202 ENSMUSG00000021431 10090 + 13:38204951-38226922 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000178564
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000178564 10.275±2.43 15.821±5.44 7.503±0.00 26.825±8.61 24.463±5.65 6.588±1.38 11.301±1.80 9.722±3.61 24.940±0.00 1.523±0.19 37.033±8.89 19.833±16.55 14.455±10.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T6 CIL_0007T6_0002 VISTA 13:37870525-38472280
CIL_00037Z CIL_00037Z_0002 CGP 13:38151328-38227663
CIL_000380 CIL_000380_0002 CGP 13:38204939-38499728

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000342415 SNRNP48-001 protein_coding Homo_sapiens 0 307
ENST00000496946 SNRNP48-002 retained_intron Homo_sapiens 0 307

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