C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein 48 (U11/U12)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000091641 Snrnp48-201 ENSMUSG00000021431 10090 + 13:38204939-38227663 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000091641
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000091641 1.976±0.00 13.025±1.28 3.626±0.00 3.373±0.00 3.540±0.39 1.608±0.00 2.385±0.70 3.612±1.46 2.318±0.55 4.712±1.66 4.124±1.62 2.173±0.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T6 CIL_0007T6_0002 VISTA 13:37870525-38472280
CIL_00037Z CIL_00037Z_0002 CGP 13:38151328-38227663
CIL_000380 CIL_000380_0002 CGP 13:38204939-38499728

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005689 ISS U12-type spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process
GO:0008380 IEA RNA splicing
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000342415 SNRNP48-001 protein_coding Homo_sapiens 0 1142
ENST00000496946 SNRNP48-002 retained_intron Homo_sapiens 0 721

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