C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Brca1 associated protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021901 Bap1 10090 + 14:31251450-31259944 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000022458 Bap1-001 31251450-31259944 protein_coding
  ENSMUST00000185700 Bap1-008 31257491-31258888 retained_intron
  ENSMUST00000185987 Bap1-006 31256539-31257641 retained_intron
  ENSMUST00000187156 Bap1-007 31256269-31258524 nonsense_mediated_decay
  ENSMUST00000188453 Bap1-005 31251580-31255137 nonsense_mediated_decay
  ENSMUST00000188714 Bap1-004 31251503-31253014 retained_intron
  ENSMUST00000189834 Bap1-003 31251511-31254201 retained_intron
  ENSMUST00000190788 Bap1-002 31251538-31259930 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022458ENSMUST00000185987ENSMUST00000187156ENSMUST00000190788
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022458 20.180±2.09 17.011±4.72 14.092±0.78 33.479±11.07 18.353±2.93 15.472±1.57 12.919±0.60 22.117±1.63 13.742±4.59 19.333±0.43 14.991±0.45 24.390±6.97 19.693±9.15 29.440±11.72
ENSMUST00000185987 N/A N/A N/A 37.547±0.00 N/A N/A N/A N/A N/A N/A N/A 20.570±0.00 17.991±0.75 N/A
ENSMUST00000187156 N/A N/A N/A 56.659±0.00 N/A N/A N/A N/A N/A N/A N/A 33.902±0.00 22.031±1.38 68.415±0.00
ENSMUST00000190788 2.448±0.00 6.512±2.25 1.992±0.00 N/A 2.658±0.00 N/A N/A N/A 1.580±0.00 N/A N/A 3.963±0.69 1.851±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0002 VISTA 14:30932335-31535522

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001558 ISS regulation of cell growth
GO:0003682 ISS chromatin binding
GO:0004221 ISS ubiquitin thiolesterase activity
GO:0004843 ISS ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008285 ISA negative regulation of cell proliferation
GO:0016579 ISS protein deubiquitination
GO:0035517 ISS PR-DUB complex
GO:0035520 ISS monoubiquitinated protein deubiquitination
GO:0035522 ISS monoubiquitinated histone H2A deubiquitination
GO:0051726 ISS regulation of cell cycle
GO:0071108 ISS protein K48-linked deubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063051 bap1 BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase) protein_coding Danio_rerio
ENSG00000163930 BAP1 BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase) protein_coding Homo_sapiens

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