C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Brca1 associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000190788 Bap1-002 ENSMUSG00000021901 10090 + 14:31251538-31259930 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastLiverOvaryPlacentaENSMUST00000190788
Transcript ID Adipose Adrenal Bladder Breast Liver Ovary Placenta
ENSMUST00000190788 2.448±0.00 6.512±2.25 1.992±0.00 2.658±0.00 1.580±0.00 3.963±0.69 1.851±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0002 VISTA 14:30932335-31535522

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296288 BAP1-010 protein_coding Homo_sapiens 0 1303
ENST00000460680 BAP1-001 protein_coding Homo_sapiens 0 1576
ENST00000466093 BAP1-013 retained_intron Homo_sapiens 0 507
ENST00000469613 BAP1-015 protein_coding Homo_sapiens 0 521
ENST00000470173 BAP1-016 protein_coding Homo_sapiens 0 712
ENST00000478368 BAP1-014 protein_coding Homo_sapiens 0 558
ENST00000483984 BAP1-009 retained_intron Homo_sapiens 0 599
ENST00000490804 BAP1-008 retained_intron Homo_sapiens 0 226
ENST00000490917 BAP1-004 nonsense_mediated_decay Homo_sapiens 0 255

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