C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: paraspeckle protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021938 Pspc1 10090 - 14:56722441-56778316 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000022507 Pspc1-001 56722441-56778316 protein_coding
  ENSMUST00000163924 Pspc1-002 56723986-56778316 protein_coding
  ENSMUST00000168524 Pspc1-004 56748535-56761867 retained_intron
  ENSMUST00000168575 Pspc1-003 56748858-56777927 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022507ENSMUST00000163924ENSMUST00000168575
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022507 6.737±2.68 4.127±1.14 9.861±0.53 30.867±5.16 3.044±1.13 3.138±0.87 2.047±0.32 2.887±0.34 7.707±7.86 5.618±0.86 2.901±0.37 11.987±2.32 15.243±9.00 19.027±5.97
ENSMUST00000163924 1.172±0.00 N/A 0.940±0.03 N/A 0.541±0.33 N/A N/A N/A 1.696±0.51 N/A N/A N/A N/A N/A
ENSMUST00000168575 N/A N/A N/A 121.535±0.00 N/A N/A N/A N/A N/A N/A N/A 130.708±0.00 143.203±88.75 266.714±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000433 CIL_000433_0002 CGP 14:56668248-56778316
CIL_000432 CIL_000432_0002 CGP 14:56722441-56811716

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001047 IDA core promoter binding
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 IDA nucleoplasm
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0042382 IDA paraspeckles
GO:0042752 IMP regulation of circadian rhythm
GO:0044822 IEA poly(A) RNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0048511 IEA rhythmic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006621 pspc1 paraspeckle component 1 protein_coding Danio_rerio
ENSG00000121390 PSPC1 paraspeckle component 1 protein_coding Homo_sapiens

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