C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: paraspeckle component 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000121390 PSPC1 9606 - 13:19674752-19783019 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000338910 PSPC1-002 19702500-19782917 protein_coding
  ENST00000427943 PSPC1-004 19759347-19783002 protein_coding
  ENST00000471658 PSPC1-001 19674756-19782917 nonsense_mediated_decay
  ENST00000492741 PSPC1-005 19675388-19782942 nonsense_mediated_decay
  ENST00000497722 PSPC1-003 19674752-19677938 processed_transcript
  ENST00000619300 PSPC1-201 19702871-19783019 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000338910ENST00000427943ENST00000471658ENST00000492741ENST00000619300
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000338910 N/A 1.642±0.00 3.751±1.63 4.800±0.00 2.308±1.29 1.631±0.00 1.299±0.00 4.605±0.00 4.071±0.00 N/A 3.835±0.98 1.855±0.59 2.165±0.00
ENST00000427943 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.514±2.09 N/A N/A N/A
ENST00000471658 2.334±0.00 2.468±0.00 5.126±0.00 2.440±0.00 2.708±0.00 3.144±0.00 N/A 1.812±0.00 2.580±0.00 4.539±0.00 2.779±0.76 4.055±1.58 9.717±0.00
ENST00000492741 N/A N/A 5.122±1.05 4.986±1.37 1.887±0.00 1.383±0.43 3.392±1.08 2.818±1.10 5.020±0.28 1.814±0.00 7.569±4.50 5.995±2.30 12.395±6.58
ENST00000619300 2.122±0.00 4.351±0.00 5.922±0.00 2.249±0.00 N/A 2.767±0.00 4.027±0.00 1.089±0.00 N/A 2.096±1.22 14.418±9.52 12.605±10.95 29.290±23.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000433 CIL_000433_0001 CGP 13:19633681-19783019
CIL_000432 CIL_000432_0001 CGP 13:19674752-19863636

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001047 ISS core promoter binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IEA nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0042382 IEA paraspeckles
GO:0042752 ISS regulation of circadian rhythm
GO:0044822 IDA poly(A) RNA binding
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0048511 IEA rhythmic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006621 pspc1 paraspeckle component 1 protein_coding Danio_rerio
ENSMUSG00000021938 Pspc1 paraspeckle protein 1 protein_coding Mus_musculus

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