C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paraspeckle protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022507 Pspc1-001 ENSMUSG00000021938 10090 - 14:56722441-56778316 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022507
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022507 6.737±2.68 4.127±1.14 9.861±0.53 30.867±5.16 3.044±1.13 3.138±0.87 2.047±0.32 2.887±0.34 7.707±7.86 5.618±0.86 2.901±0.37 11.987±2.32 15.243±9.00 19.027±5.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000433 CIL_000433_0002 CGP 14:56668248-56778316
CIL_000432 CIL_000432_0002 CGP 14:56722441-56811716

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001047 IDA core promoter binding
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 IDA nucleoplasm
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0042382 IDA paraspeckles
GO:0042752 IMP regulation of circadian rhythm
GO:0044822 IEA poly(A) RNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0048511 IEA rhythmic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000338910 PSPC1-002 protein_coding Homo_sapiens 0 2540
ENST00000427943 PSPC1-004 protein_coding Homo_sapiens 0 990
ENST00000442352 PSPC1P1-001 unprocessed_pseudogene Homo_sapiens 0 610
ENST00000455130 PSPC1P2-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 320
ENST00000471658 PSPC1-001 nonsense_mediated_decay Homo_sapiens 0 1578
ENST00000492741 PSPC1-005 nonsense_mediated_decay Homo_sapiens 0 1578
ENST00000619300 PSPC1-201 protein_coding Homo_sapiens 0 2398

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