C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_000433_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000196199-ENSG00000121390 CGP 9606 13:19633681-19783019
GeneTranscriptPositionBiotype
ENSG00000121390 (PSPC1)
paraspeckle component 1
ENST00000338910 (PSPC1-002) 19702500-19782917 protein_coding
ENST00000427943 (PSPC1-004) 19759347-19783002 protein_coding
ENST00000471658 (PSPC1-001) 19674756-19782917 nonsense_mediated_decay
ENST00000492741 (PSPC1-005) 19675388-19782942 nonsense_mediated_decay
ENST00000497722 (PSPC1-003) 19674752-19677938 processed_transcript
ENST00000619300 (PSPC1-201) 19702871-19783019 protein_coding
ENSG00000196199 (MPHOSPH8)
M-phase phosphoprotein 8
ENST00000361479 (MPHOSPH8-001) 19633681-19673459 protein_coding
ENST00000414242 (MPHOSPH8-005) 19646754-19650412 protein_coding
ENST00000449056 (MPHOSPH8-003) 19668391-19672072 protein_coding
ENST00000467481 (MPHOSPH8-002) 19658995-19661090 processed_transcript
ENST00000496525 (MPHOSPH8-004) 19670340-19671942 processed_transcript
ENSG00000275014 (Metazoa_SRP)
Metazoan signal recognition particle RNA
ENST00000489872 (Metazoa_SRP.1-305) 19736975-19737254 misc_RNA
CIL_000433_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000079184-ENSMUSG00000021938 CGP 10090 14:56668248-56778316
GeneTranscriptPositionBiotype
ENSMUSG00000021938 (Pspc1)
paraspeckle protein 1
ENSMUST00000022507 (Pspc1-001) 56722441-56778316 protein_coding
ENSMUST00000163924 (Pspc1-002) 56723986-56778316 protein_coding
ENSMUST00000168524 (Pspc1-004) 56748535-56761867 retained_intron
ENSMUST00000168575 (Pspc1-003) 56748858-56777927 nonsense_mediated_decay
ENSMUSG00000079184 (Mphosph8)
M-phase phosphoprotein 8
ENSMUST00000116468 (Mphosph8-001) 56668248-56697430 protein_coding
ENSMUST00000130246 (Mphosph8-002) 56672232-56673977 processed_transcript
ENSMUST00000138174 (Mphosph8-004) 56693138-56697427 processed_transcript
ENSMUST00000152370 (Mphosph8-005) 56693424-56697428 processed_transcript
ENSMUST00000152606 (Mphosph8-003) 56688381-56691249 processed_transcript
ENSMUSG00000079489 (C030013D06Rik)
RIKEN cDNA C030013D06 gene
ENSMUST00000113723 (C030013D06Rik-001) 56733657-56734954 sense_intronic
ENSMUSG00000097743 (Gm16973)
predicted gene, 16973
ENSMUST00000180682 (Gm16973-201) 56697347-56701268 lincRNA
ENSMUST00000180752 (Gm16973-202) 56696280-56699361 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000433_0001ENSG00000121390ENST00000338910ENST00000427943ENST00000471658ENST00000492741ENST00000497722ENST00000619300ENSG00000196199ENST00000361479ENST00000414242ENST00000449056ENST00000467481ENST00000496525ENSG00000275014ENST00000489872CIL_000433_0002ENSMUSG00000021938ENSMUST00000022507ENSMUST00000163924ENSMUST00000168524ENSMUST00000168575ENSMUSG00000079184ENSMUST00000116468ENSMUST00000130246ENSMUST00000138174ENSMUST00000152370ENSMUST00000152606ENSMUSG00000079489ENSMUST00000113723ENSMUSG00000097743ENSMUST00000180682ENSMUST00000180752
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000433_0001ENSG00000121390ENST00000338910ENST00000427943ENST00000471658ENST00000492741ENST00000619300ENSG00000196199ENST00000361479ENST00000414242ENSG00000275014ENST00000489872CIL_000433_0002ENSMUSG00000021938ENSMUST00000022507ENSMUST00000163924ENSMUST00000168575ENSMUSG00000079184ENSMUST00000116468ENSMUST00000138174ENSMUSG00000079489ENSMUST00000113723ENSMUSG00000097743ENSMUST00000180682ENSMUST00000180752
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000121390 ENST00000338910 N/A 1.642±0.00 N/A 3.751±1.63 4.800±0.00 2.308±1.29 1.631±0.00 1.299±0.00 4.605±0.00 4.071±0.00 N/A 3.835±0.98 1.855±0.59 2.165±0.00
ENST00000427943 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.514±2.09 N/A N/A N/A
ENST00000471658 2.334±0.00 2.468±0.00 N/A 5.126±0.00 2.440±0.00 2.708±0.00 3.144±0.00 N/A 1.812±0.00 2.580±0.00 4.539±0.00 2.779±0.76 4.055±1.58 9.717±0.00
ENST00000492741 N/A N/A N/A 5.122±1.05 4.986±1.37 1.887±0.00 1.383±0.43 3.392±1.08 2.818±1.10 5.020±0.28 1.814±0.00 7.569±4.50 5.995±2.30 12.395±6.58
ENST00000497722 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619300 2.122±0.00 4.351±0.00 N/A 5.922±0.00 2.249±0.00 N/A 2.767±0.00 4.027±0.00 1.089±0.00 N/A 2.096±1.22 14.418±9.52 12.605±10.95 29.290±23.00
ENSG00000196199 ENST00000361479 6.884±0.00 5.389±0.00 0.416±0.00 5.013±2.50 4.682±0.00 6.541±4.14 4.115±3.76 4.143±3.75 2.224±0.05 5.572±0.00 1.563±1.19 9.726±4.95 6.598±3.08 13.954±1.62
ENST00000414242 N/A N/A 2.598±0.00 N/A 3.375±0.00 1.891±0.00 N/A 1.700±0.00 2.724±0.00 N/A N/A N/A N/A N/A
ENST00000449056 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467481 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000275014 ENST00000489872 N/A 0.451±0.00 N/A 0.531±0.39 0.336±0.00 1.892±0.00 N/A N/A N/A 1.061±0.00 0.060±0.00 3.532±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021938 ENSMUST00000022507 6.737±2.68 4.127±1.14 9.861±0.53 30.867±5.16 3.044±1.13 3.138±0.87 2.047±0.32 2.887±0.34 7.707±7.86 5.618±0.86 2.901±0.37 11.987±2.32 15.243±9.00 19.027±5.97
ENSMUST00000163924 1.172±0.00 N/A 0.940±0.03 N/A 0.541±0.33 N/A N/A N/A 1.696±0.51 N/A N/A N/A N/A N/A
ENSMUST00000168524 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168575 N/A N/A N/A 121.535±0.00 N/A N/A N/A N/A N/A N/A N/A 130.708±0.00 143.203±88.75 266.714±0.00
ENSMUSG00000079184 ENSMUST00000116468 2.453±1.36 2.248±1.26 5.840±1.03 11.521±2.74 1.739±0.29 1.065±0.47 2.181±0.43 2.383±0.55 4.042±2.82 3.033±0.44 3.177±0.11 5.498±4.84 8.119±3.59 19.555±17.07
ENSMUST00000130246 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138174 1.037±0.00 N/A N/A N/A 0.712±0.00 1.147±0.00 N/A N/A N/A N/A N/A 1.411±0.00 N/A N/A
ENSMUST00000152370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000079489 ENSMUST00000113723 0.240±0.04 0.137±0.00 0.449±0.05 1.012±0.62 0.546±0.21 0.372±0.15 0.093±0.05 0.147±0.06 0.550±0.35 0.316±0.13 0.036±0.01 0.373±0.20 0.343±0.35 0.283±0.14
ENSMUSG00000097743 ENSMUST00000180682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.905±0.72 N/A N/A
ENSMUST00000180752 1.267±0.47 0.816±0.23 5.190±0.31 7.506±0.83 1.496±0.84 0.694±0.18 0.801±0.00 1.011±0.53 4.605±3.47 1.999±0.00 1.117±0.08 3.268±2.11 3.447±0.66 7.245±2.07

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